XLOC_006545 (washc2c)


Basic Information

Item Value
gene id XLOC_006545
gene name washc2c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18073211 ~ 18122333 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012671
GCCGAGCAGGTGTGGGAGAGACCCTGGACACTGGAAGAGATGCAGAAATCCAGCACCAACTGGTCACTGGCAGCAGACTCGGGGCTGTTCCTTTTCCTGCGAGACTTCTCTCAGAGGATGCTGTCCAAGACACATGAGATCGAGAAGCAGCTGGACGGTCTCATCCGGGACACTAAAGCCACCGACAGCCAGCTACATACAGTGTTTAATGATTTCCTCATGCTGTCCAACACACAGTTCATCGAAAACAGAGTTTATGATGAAGAGGTGGAAGACCCTACACCAAAGTCTGAAACCACTGAGAGACAACCTGAACAGGAGAAGACGCGAGAACAGAAGGAAGCAGAACTTATTCCCAAAGTTCAAGAGGCCGTCAACTATGGTCTGAAAGTCTTGGAATCTGCTTTTGAACAGCTGGACATTAAAGCAGGAAACTCGGACTCTGAGGATGAGGAAGTTCTGGAAAAAGTAGAGCCTATTTTGGAAGCAAAGGATCTGTATGTGGACCGGCCTTTGCCATACTTGATCGGGTCTCAAGCCTTTATGGATCAGGATGATGTTGGCCTTGGAGATCTGTCCAGTGATGAAATGTCTATCGGTAGTGACAGAGACAGTGTCCTTGAGAGTGATGTTGAAGATGGTGATGAGCACACTGACCAGGACGATTACTCTGACCAGGATGAGGAAGTCCAAGGCAACTTTAAGAAGAAACCGTCCATTGCTAGTTATAATGATGCTGATGAAGAGAACGATGATTCTGACATCTTTGGAGGCTCTGAtaaggatgaagatgaagatgaccTCAGAAAGGACACTGGTGTACCATCCTTCGCTGATGAACTCGCTGCCAGAATCAAGGGAGAGACTCAGAACAAGCCAGAAGCAGATCGCTCATCATTGTCATCAGGCCCATCCACCACCAGCAAGAAGAGTAAAACCAAGAATGTGCCAAAGCCTCAGGTGGAAGATGATCAGGATGAGATGTTCAGACCACCAACAATGGAAGATGAGGAATATTCTCCATTTGGCGGAAAGGGTGGTCTCTTTAGTGGAGGCAAAGGCCTGTTTGATGATGACGATGAGGGAGATTTGTTTTCTGAAGCACCCAAAAATGTACCAGTGGAAAAGGAGAAGACAGTAGCACAGCCAGCCGAGCctcataaaactaaaaaaatacccACCGGCGCAGTCTCTATCTTTCCTGGTAACAGCCTACTTGGCTCAGCAAATGATTCCGAGTCTCCAAAGAGCAGCGACAGCAGGAGTCCAGCGCTGCCTAAAGCCTCTATTGGAGGAGGACTCTTTGACGATGACGAAGATGATGATGATTTCTTCAGTGGAAAGACGCAAAGCAAATCCACCCCTGGACAAGATAAGAAAACACCAAAGAAAACTGTAGACCTGTTTGGGGAAGCTGATGAGGAGGATGAGGATGAAGATGACGATACAGCAATGTTCAGTGGGAAAGCCATTTCAGCTCTTCCTCAGCAGGACATAAGTGCCAACGGAGAGGAGGAGACGCGTCCTCCTGAGAAAAAGCCTCCTGCTGGAGCCGTTTCAATGTTTGGGCCTGGCACTAAAAATATACTGGAGGGTTTGAAGAAACGTCGGCCTTCCACCAGCGAAGAGTCTACCAAATCTGAAGAGAGTGGACATGCACCTGAACCAGTGAAATCTTCACCTGCTCTGGGATCAGCAGAAAAAATGCAGAGCAAGAGTCTGTTCTCAGATGATGAAGACTCTCAAatattctCAAGTGAAACTACAAGTAAATCAAAGCCTACAACTCAGAACAAACCAAGTAAAGCTCCGCTCTCAATATttgatgatgaagaagaagagGACCTGTTTTCATCAACACCAAAGCCAGTTCCGGTCAAAAAGACATCTCTGCCACCCAAGAATGCTTTATCCAGTTCACTCTTCAGTGATGATGAGGATCAGTGGATGAGCTTAAAGTCCAGCAAAGAAAACCCCGAGGTGAAGCCCAGTGGAATGAAGCCAAGTATCAGCGCCCCCTCCAGGCTGCCCAGTGTCAAAACAACACACAAAGATGGCCTGTTTGATGATAAAGATGACGAGGATCTGTTTGTAGCCACAAATCAGTCAAGTAAGACGTCTTCTCAAAGAGTGTCTCTGTTATttgaggatgaagatgatgaagacaaAGAGCCTCTTTTTGGCTTTAAGACGCCTGCAATTAAAACTCCTCCTGAATCGAAGACTTCCGGAGTTTCATCTCTGTTTGAGTCTACTGAGGAGGACACTGGACCTAGTGTAGTGAAAGAAAAGATAacagaggagaagaagaagcCTGTAGAGTCTGTTCCATCCTCGGATGACAGTTTTGAGGTGAAGAAGAAGCCTGCAGGAGCAGTGAGCCTTTTTGGTGGAATTGATATACTAGGAGACAAGCAAGACACCATTAAAAAACCACCTAAGACTCAAGAGGAGATTCCTGATGACGAGCTTCAAAAGGAGGGTCCACCGCCCATGGAGAGTAAAGGGACCAAGACCAAGAAAACAGCTCTGAGTCTTTTTGATGAGgacgatgacgatgatgatgacgatTTCAGCACAGATGAAATAATTCCTGCACCAACAGCATCCAGATCTACAGAAAAGAATGCActgaagGAACACGGGCCCCGCATGAAGAGCACGGGTGTGTTTCAGGATGAGGAGCTGCTTTTCAGTCAAACACAACAGAGAGACAATGACCCAGATGTAGACCTCTTCGCCACTTCTCCTAAACCAGCTGTGCCACCTCAGAGCTCTGCTAAATCTGTTGCCCCAACACTGTTtggggatgatgatgatgacgacctCTTCAGTTCAGCAAAGCCTAAAGCTCCTCCGAAAGTACCAGAGAAGCCCAGCAAGCCTAAAACAAATGAAATCGACAAGTCCATATCCACCTCAAGCAAGGCGGTCTTAGCATTGAACCCTGCGGGCCTCCTGCCAGGTGCTGTGCCACGGGCTCCAGGAGCTGTCAGTGTAATCCCCGGACTGGCACACACTGGCCTTCCTGCAGCTGCCAGGACGATGCCTGATCATCAAGGCTCCAGCGAGGGCGGCGTGAGCTTTGACTCGCCCGCTCTGATCAGCACACTGCTGAATGCTAACAAGGGTCGAGCTAAAGGCGCAGGTAAACGGCGGCCACAGACGAGGGCAGCGAGGCATCTTGCAGCACAGCAGTCTGATGAAGCTTCTGGCGAGAACGTCTCTGTTCAAAAAAATGAACCAGCAATGGCtgcttccctccctcccttcaACCCTGTTTCAGTGCGACCCTCAGCGCTCACTATCCCCGTCAGCGCCCCGGCTCCCGCCAAAAGCCCAGATGAAGCAGTCCGGCCGAAGAGATTTTTGGAGCCTACAGACGATCTGTTTGATTCGGATGATCTCTTCGCCACAAAGCCTGTTTCCTCCTCCAAACACAAAATCCAAACCACTGAGGAAGGCCAGAAGAAGGTCTCCAACACAGAGGATGTCACACCATCAAAGAAAGACCAAGCCCCGTCTATTTTCGACAGCCACGATGAAGATCTTTTCGCCACAGTGAAACCGAAATCTGTCCAGAAAGCCAAACACATGCCGTTTCTAGATGAAGGTGGCGAAGATAGCGACGAAGATATTTTCGGAGCAGGAAAAAGTAAAAGCCTAGAGAGTAAAAACTCCAAAAAAGAGGCCAGCGCTGTAAAATCTGACATTTTTCAGGATGAAGTGAAAGAGCCTCCCAAGGCCCAGAAGAATCCCAAGGAAGCGTCTTTGGATGCAAGTTTGTTTGATGACGATGTTGATATTTTCGCTGACTTGACTGGCACCTCAAAGCCAAAGGAGAAGAAAGCAAAGaagaaagtggagactaaatctATATTCGACGATGACATGGATGATATCTTCTCGACTGGGACTACTAAACCAACAGTAAAACCGTCCTCCAAGTCCAAGAAGAGCCAGCCCATCCAGGAGCCTGCCTCAACCGCAGAAACAGCCCACAATATTTTTGATGATCCCCTGAATGCATTTGGGGGGAACTGAGTTTCTTTCATATCAGCTATGTGTTTAACTCTGTAGCGCTGTTTGTGGCCTAAAAGAAGGTAGACAAAATCTAACACCGTTTGTGAATCATTTAAACTCTAATCTGTGAAGTCATCTGATTGTTAAATGATGTAGCGTCATCAAATGGCATTGACATCTGCAACGGTTCATGTGTCTTTTATTAGCACTTTAAAGGTAAGCATTGTGTGGTCGTGTGTAAAACAAGACATTCCTTTGACATTGTCAACTGTAAGGTTTCATTTTCCAGTGTGGTGCCATAATTCTATGCCTGTGCGCCAACATAAgtgcttttgttgtttttgtaactCGAACTGAAGTTTTCTTGTGTTGCATGTTGAAAAGATTTTTGGAaactaaagaaaatatattttatgaaacgAA
>TCONS_00012672
GTAACAGCCTACTTGGCTCAGCAAATGATTCCGAGTCTCCAAAGAGCAGCGACAGCAGGAGTCCAGCGCTGCCTAAAGCCTCTATTGGAGGAGGACTCTTTGACGATGACGAAGATGATGATGATTTCTTCAGTGGAAAGACGCAAAGCAAATCCACCCCTGGACAAGATAAGAAAACACCAAAGAAAACTGTAGACCTGTTTGGGGAAGCTGATGAGGAGGATGAGGATGAAGATGACGATACAGCAATGTTCAGTGGGAAAGCCATTTCAGCTCTTCCTCAGCAGGACATAAGTGCCAACGGAGAGGAGGAGACGCGTCCTCCTGAGAAAAAGCCTCCTGCTGGAGCCGTTTCAATGTTTGGGCCTGGCACTAAAAATATACTGGAGGGTTTGAAGAAACGTCGGCCTTCCACCAGCGAAGAGTCTACCAAATCTGAAGAGAGTGGACATGCACCTGAACCAGTGAAATCTTCACCTGCTCTGGGATCAGCAGAAAAAATGCAGAGCAAGAGTCTGTTCTCAGATGATGAAGACTCTCAAatattctCAAGTGAAACTACAAGTAAATCAAAGCCTACAACTCAGAACAAACCAAGTAAAGCTCCGCTCTCAATATttgatgatgaagaagaagagGACCTGTTTTCATCAACACCAAAGCCAGTTCCGGTCAAAAAGACATCTCTGCCACCCAAGAATGCTTTATCCAGTTCACTCTTCAGTGATGATGAGGATCAGTGGATGAGCTTAAAGTCCAGCAAAGAAAACCCCGAGGTGAAGCCCAGTGGAATGAAGCCAAGTATCAGCGCCCCCTCCAGGCTGCCCAGTGTCAAAACAACACACAAAGATGGCCTGTTTGATGATAAAGATGACGAGGATCTGTTTGTAGCCACAAATCAGTCAAGTAAGACGTCTTCTCAAAGAGTGTCTCTGTTATttgaggatgaagatgatgaagacaaAGAGCCTCTTTTTGGCTTTAAGACGCCTGCAATTAAAACTCCTCCTGAATCGAAGACTTCCGGAGTTTCATCTCTGTTTGAGTCTACTGAGGAGGACACTGGACCTAGTGTAGTGAAAGAAAAGATAacagaggagaagaagaagcCTGTAGAGTCTGTTCCATCCTCGGATGACAGTTTTGAGGTGAAGAAGAAGCCTGCAGGAGCAGTGAGCCTTTTTGGTGGAATTGATATACTAGGAGACAAGCAAGACACCATTAAAAAACCACCTAAGACTCAAGAGGAGATTCCTGATGACGAGCTTCAAAAGGAGGGTCCACCGCCCATGGAGAGTAAAGGGACCAAGACCAAGAAAACAGCTCTGAGTCTTTTTGATGAGgacgatgacgatgatgatgacgatTTCAGCACAGATGAAATAATTCCTGCACCAACAGCATCCAGATCTACAGAAAAGAATGCActgaagGAACACGGGCCCCGCATGAAGAGCACGGGTGTGTTTCAGGATGAGGAGCTGCTTTTCAGTCAAACACAACAGAGAGACAATGACCCAGATGTAGACCTCTTCGCCACTTCTCCTAAACCAGCTGTGCCACCTCAGAGCTCTGCTAAATCTGTTGCCCCAACACTGTTtggggatgatgatgatgacgacctCTTCAGTTCAGCAAAGCCTAAAGCTCCTCCGAAAGTACCAGAGAAGCCCAGCAAGCCTAAAACAAATGAAATCGACAAGTCCATATCCACCTCAAGCAAGGCGGTCTTAGCATTGAACCCTGCGGGCCTCCTGCCAGGTGCTGTGCCACGGGCTCCAGGAGCTGTCAGTGTAATCCCCGGACTGGCACACACTGGCCTTCCTGCAGCTGCCAGGACGATGCCTGATCATCAAGGCTCCAGCGAGGGCGGCGTGAGCTTTGACTCGCCCGCTCTGATCAGCACACTGCTGAATGCTAACAAGGGTCGAGCTAAAGGCGCAGGTAAACGGCGGCCACAGACGAGGGCAGCGAGGCATCTTGCAGCACAGCAGTCTGATGAAGCTTCTGGCGAGAACGTCTCTGTTCAAAAAAATGAACCAGCAATGGCtgcttccctccctcccttcaACCCTGTTTCAGTGCGACCCTCAGCGCTCACTATCCCCGTCAGCGCCCCGGCTCCCGCCAAAAGCCCAGATGAAGCAGTCCGGCCGAAGAGATTTTTGGAGCCTACAGACGATCTGTTTGATTCGGATGATCTCTTCGCCACAAAGCCTGTTTCCTCCTCCAAACACAAAATCCAAACCACTGAGGAAGGCCAGAAGAAGGTCTCCAACACAGAGGATGTCACACCATCAAAGAAAGACCAAGCCCCGTCTATTTTCGACAGCCACGATGAAGATCTTTTCGCCACAGTGAAACCGAAATCTGTCCAGAAAGCCAAACACATGCCGTTTCTAGATGAAGGTGGCGAAGATAGCGACGAAGATATTTTCGGAGCAGGAAAAAGTAAAAGCCTAGAGAGTAAAAACTCCAAAAAAGAGGCCAGCGCTGTAAAATCTGACATTTTTCAGGATGAAGTGAAAGAGCCTCCCAAGGCCCAGAAGAATCCCAAGGAAGCGTCTTTGGATGCAAGTTTGTTTGATGACGATGTTGATATTTTCGCTGACTTGACTGGCACCTCAAAGCCAAAGGAGAAGAAAGCAAAGaagaaagtggagactaaatctATATTCGACGATGACATGGATGATATCTTCTCGACTGGGACTACTAAACCAACAGTAAAACCGTCCTCCAAGTCCAAGAAGAGCCAGCCCATCCAGGAGCCTGCCTCAACCGCAGAAACAGCCCACAATATTTTTGATGATCCCCTGAATGCATTTGGGGGGAACTGA
>TCONS_00012673
AAAACAGCTCTGAGTCTTTTTGATGAGgacgatgacgatgatgatgacgatTTCAGCACAGATGAAATAATTCCTGCACCAACAGCATCCAGATCTACAGAAAAGAATGCActgaagGAACACGGGCCCCGCATGAAGAGCACGGGTGTGTTTCAGGATGAGGAGCTGCTTTTCAGTCAAACACAACAGAGAGACAATGACCCAGATGTAGACCTCTTCGCCACTTCTCCTAAACCAGCTGTGCCACCTCAGAGCTCTGCTAAATCTGTTGCCCCAACACTGTTtggggatgatgatgatgacgacctCTTCAGTTCAGCAAAGCCTAAAGCTCCTCCGAAAGTACCAGAGAAGCCCAGCAAGCCTAAAACAAATGAAATCGACAAGTCCATATCCACCTCAAGCAAGGAGCCCACAAACCctctaaaatctaaaaaaaccTCACGGATCGGAGAACTTCAAGCGGTCTTAGCATTGAACCCTGCGGGCCTCCTGCCAGGTGCTGTGCCACGGGCTCCAGGAGCTGTCAGTGTAATCCCCGGACTGGCACACACTGGCCTTCCTGCAGCTGCCAGGACGATGCCTGATCATCAAGGCTCCAGCGAGGGCGGCGTGAGCTTTGACTCGCCCGCTCTGATCAGCACACTGCTGAATGCTAACAAGGGTCGAGCTAAAGGCGCAGGTAAACGGCGGCCACAGACGAGGGCAGCGAGGCATCTTGCAGCACAGCAGTCTGATGAAGCTTCTGGCGAGAACGTCTCTGTTCAAAAAAATGAACCAGCAATGGCtgcttccctccctcccttcaACCCTGTTTCAGTGCGACCCTCAGCGCTCACTATCCCCGTCAGCGCCCCGGCTCCCGCCAAAAGCCCAGATGAAGCAGTCCGGCCGAAGAGATTTTTGGAGCCTACAGACGATCTGTTTGATTCGGATGATCTCTTCGCCACAAAGCCTGTTTCCTCCTCCAAACACAAAATCCAAACCACTGAGGAAGGCCAGAAGAAGGTCTCCAACACAGAGGATGTCACACCATCAAAGAAAGACCAAGCCCCGTCTATTTTCGACA
>TCONS_00012674
CTGATTCTCTGCAGACGGAACATGGCCGACCTCTCAAAATACTGAGCTGATGATGGGGCGAATAAACAGCGACAAACTACCCTTGACTTTCCTCTCTGCTGGATTCAGGAGATTTTGAGGTGACGGAAAACACTACAGAGGATATCTGACAACAGTACGTTCATAAGATTAAACCATCATGTCTAGTTTTATGGAGAACGGCCCCAGTAATCACAATGGGGAGGCCGAGCAGGTGTGGGAGAGACCCTGGACACTGGAAGAGATGCAGAAATCCAGCACCAACTGGTCACTGGCAGCAGACTCGGGGCTGTTCCTTTTCCTGCGAGACTTCTCTCAGAGGATGCTGTCCAAGACACATGAGATCGAGAAGCAGCTGGACGGTCTCATCCGGGACACTAAAGCCACCGACAGCCAGCTACATACAGTGTTTAATGATTTCCTCATGCTGTCCAACACACAGTTCATCGAAAACAGAGTTTATGATGAAGAGGTGGAAGACCCTACACCAAAGTCTGAAACCACTGAGAGACAACCTGAACAGGAGAAGACGCGAGAACAGAAGGAAGCAGAACTTATTCCCAAAGTTCAAGAGGCCGTCAACTATGGTCTGAAAGTCTTGGAATCTGCTTTTGAACAGCTGGACATTAAAGCAGGAAACTCGGACTCTGAGGATGAGGAAGTTCTGGAAAAAGTAGAGCCTATTTTGGAAGCAAAGGATCTGTATGTGGACCGGCCTTTGCCATACTTGATCGGGTCTCAAGCCTTTATGGATCAGGATGATGTTGGCCTTGGAGATCTGTCCAGTGATGAAATGTCTATCGGTAGTGACAGAGACAGTGTCCTTGAGAGTGATGTTGAAGATGGTGATGAGCACACTGACCAGGACGATTACTCTGACCAGGATGAGGAAGTCCAAGGCAACTTTAAGAAGAAACCGTCCATTGCTAGTTATAATGATGCTGATGAAGAGAACGATGATTCTGACATCTTTGGAGGCTCTGAtaaggatgaagatgaagatgaccTCAGAAAGGACACTGGTGTACCATCCTTCGCTGATGAACTCGCTGCCAGAATCAAGGGAGAGACTCAGAACAAGCCAGAAGCAGATCGCTCATCATTGTCATCAGGCCCATCCACCACCAGCAAGAAGAGTAAAACCAAGAATGTGCCAAAGCCTCAGGTGGAAGATGATCAGGATGAGATGTTCAGACCACCAACAATGGAAGATGAGGAATATTCTCCATTTGGCGGAAAGGGTGGTCTCTTTAGTGGAGGCAAAGGCCTGTTTGATGATGACGATGAGGGAGATTTGTTTTCTGAAGCACCCAAAAATGTACCAGTGGAAAAGGAGAAGACAGTAGCACAGCCAGCCGGTAAGTAAATAACTGTCATTAATCCTGTTTCCACTTggtattaaagagatagttcacccaaaaa

Function

symbol description
washc2c Predicted to enable phosphatidylinositol phosphate binding activity and retromer complex binding activity. Predicted to be involved in protein localization to endosome and retrograde transport, endosome to Golgi. Predicted to be part of WASH complex. Predicted to be active in early endosome. Orthologous to several human genes including WASHC2C (WASH complex subunit 2C).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-87 Predicted to enable phosphatidylinositol phosphate binding activity and retromer complex binding activity. Predicted to be involved in protein localization to endosome and retrograde transport, endosome to Golgi. Predicted to be part of WASH complex. Predicted to be active in early endosome. Orthologous to several human genes including WASHC2C (WASH complex subunit 2C).

Ensembl:

ensembl_id ENSDARG00000062532

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012671 False 4446 mRNA 0.47 30 18073211 18119696
TCONS_00012672 False 2840 mRNA 0.48 17 18073613 18105278
TCONS_00012673 False 1069 mRNA 0.52 7 18076851 18088229
TCONS_00012674 True 1440 mRNA 0.47 13 18107495 18122333

Neighbor

gene id symbol gene type direction distance location
XLOC_006544 zfand4 coding downstream 3790 18019709 ~ 18069421 (-)
XLOC_006543 march8 coding downstream 62003 17751866 ~ 18011208 (-)
XLOC_006542 vdac2 coding downstream 343737 17714296 ~ 17729474 (-)
XLOC_006541 NA coding downstream 379392 17686484 ~ 17693819 (-)
XLOC_006540 NA coding downstream 542675 17494297 ~ 17530536 (-)
XLOC_006546 alox5a coding upstream 5942 18128275 ~ 18174864 (-)
XLOC_006547 slc25a16 coding upstream 56763 18179096 ~ 18195942 (-)
XLOC_006548 si:dkey-228d14.5 coding upstream 210352 18332685 ~ 18345854 (-)
XLOC_006549 BX908770.1 coding upstream 399160 18521493 ~ 18548729 (-)
XLOC_006550 mat1a coding upstream 506587 18628920 ~ 18637244 (-)
XLOC_006471 BX537274.2 misc downstream 7808306 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 17246986 825904 ~ 826225 (-)
XLOC_006538 NA non-coding downstream 1194141 16868380 ~ 16879070 (-)
XLOC_006537 BX323467.1 non-coding downstream 1765328 16307767 ~ 16307883 (-)
XLOC_006536 NA non-coding downstream 1811638 16260651 ~ 16261573 (-)
XLOC_006551 CR932438.1 non-coding upstream 522557 18644890 ~ 18645005 (-)
XLOC_006552 CR932438.2 non-coding upstream 527159 18649492 ~ 18649682 (-)
XLOC_006554 CR932361.2 non-coding upstream 592977 18715310 ~ 18715426 (-)
XLOC_006556 NA non-coding upstream 887839 19010172 ~ 19016833 (-)
XLOC_006557 NA non-coding upstream 1153840 19276173 ~ 19277332 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_05587131_05604001 FAM21C coding CI01180000 null 5587047 ~ 5605024 (+)