XLOC_006541


Basic Information

Item Value
gene id XLOC_006541
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 17686484 ~ 17693819 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013471
atgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcatagGTCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtcagtgttaaaagactatccagacatacaagcagccgacaaagagttctggagcaggacagacagattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctttcagacaacctctccaaagtacaataggactagGTTCCCACAACAAGGATTAGATTTGGCTACTGCAGTCCCGGTTTGGGCCAGCCTCACTTGTGAAGACTAAAGATGAAGACAACATACAAGAACAATTTCGAGGATGGCAACACACTTTTTATTCCACCTATTTATCCCCTTTTATGTGTAAGCAACTTTccacaagataaaacaaaagtaaatgacaggttatttcttttcattttgtctgttttcttggaacattgtacacaatttacaaccagttttatatatatataaaaacttctggagaaagtcttatttcttttatttcggctagaataaaaacagtttagaatttttttaaaaacattttaaggtcaatattatttgcccctttaagcaattttttttgactgtctacagaacaaaccatcattatacaataacttgcctaattaccctaacctgcctagttaattaacctagttaagcctttaaatgtcactttaggctgtatagaagtgtcttgaagaatatctagtcaaatactatttactcagttattagaaatgagttattaaaactattgtgattagaaatgtgttaaaaatatttctgttaaacagaaattaagggattatatatatatatatatatatatatatatatatatatatatata
>TCONS_00013472
gttttgtaacagattagtaggctataaagctcgtcttaaagataatagcgtatataaaactactaaatacattttaaattcaatatataaaatacaaggttattatttaaatagtctatggagtgatcatgtttataaatgtaatactgcatgactttgatgtgcgcgcgcgcgtctcATTCCAACACTGGAGAGGAGGGGATGTTGCTATGGGAAACGAAGCTACAACACGACACGACACCACCTGAAAGACACAACACGACTTCTCTCAAGCTGCCGTTTTGACagttttcaggagtgagAGAATAACCCCCTGCTACAGAAAACATAACACAAGATTCCTAAATTTCTGAagggagctgatcacagagatgcAGAAAAGACAAgaggtcaaagtttaacctaagtgccgtgtagctgatgaacatctttatatgcaaaaccagagcacccagagaaaacccacgcaaacgcagggagaatttgcaaactccacacagaaatgccagctgatccagccgaggctcgagtcagcatccttgcttattggatgcctaattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttagCAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcatatttagatacaatcaaatgtccaaaccatctctgagtgaatga

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1990399 epithelium regeneration biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0006518 peptide metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007418 ventral midline development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0021508 floor plate formation biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013471 False 899 lncRNA 0.33 4 17686484 17690664
TCONS_00013472 True 764 lncRNA 0.42 7 17690661 17693819

Neighbor

gene id symbol gene type direction distance location
XLOC_006540 NA coding downstream 155948 17494297 ~ 17530536 (-)
XLOC_006539 lrmda coding downstream 221830 16922705 ~ 17464654 (-)
XLOC_006538 NA coding downstream 807414 16868380 ~ 16879070 (-)
XLOC_006537 BX323467.1 coding downstream 1378601 16307767 ~ 16307883 (-)
XLOC_006536 NA coding downstream 1424911 16260651 ~ 16261573 (-)
XLOC_006542 vdac2 coding upstream 20477 17714296 ~ 17729474 (-)
XLOC_006543 march8 coding upstream 58047 17751866 ~ 18011208 (-)
XLOC_006544 zfand4 coding upstream 325890 18019709 ~ 18069421 (-)
XLOC_006545 washc2c coding upstream 379392 18073211 ~ 18122333 (-)
XLOC_006546 alox5a coding upstream 434456 18128275 ~ 18174864 (-)
XLOC_006471 BX537274.2 misc downstream 7421579 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 16860259 825904 ~ 826225 (-)
XLOC_006526 BX511166.1 non-coding downstream 2106332 15575137 ~ 15580152 (-)
XLOC_006551 CR932438.1 non-coding upstream 951071 18644890 ~ 18645005 (-)
XLOC_006552 CR932438.2 non-coding upstream 955673 18649492 ~ 18649682 (-)
XLOC_006554 CR932361.2 non-coding upstream 1021491 18715310 ~ 18715426 (-)
XLOC_006556 NA non-coding upstream 1316353 19010172 ~ 19016833 (-)
XLOC_006557 NA non-coding upstream 1582354 19276173 ~ 19277332 (-)

Expression


Co-expression Network