XLOC_006547 (slc25a16)


Basic Information

Item Value
gene id XLOC_006547
gene name slc25a16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18179096 ~ 18195942 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012677
GAATCAGTGAAGGACACGGTATGGACGAAACTGCCGAAAACACGTGAAAAAGATTATTACTATGCCTTGATGTACATTCAATAGTGTGAAGACATGAATGTACTGCAGTCTTGATAGTAGCCATCATGACGACAGAGGCTGTGTCTTCAGGGGCTCGACCTCAGATCCCTGCTCCTGTGCAGAGAGACGGATACTACTGGTTACGCTCTTTCACTGCTGGAGgTGTTGCGGGATGCTGTGCCAAATCCACTATAGCGCCTCTTGATAGAGTGAAAATTTTGCTACAGGCTCAAAATCCTCATTACAAACACCTTGGAGTGTTTGCCACACTTAAGGCTGTGCCGAAAAAAGAGGGTTTCCTTGGACTCTATAAAGGAAATGGAGCTATGATGATCAGGATTTTCCCATATGGGGCCATACAGTTCATGGCTTTTGATAACTACAAAAAGTTTCTCCACACAAAAGTTGGAATATCTGGGCATGTTCATCGGCTTATGGCAGGATCTATGGCagGGATGACTGCGGTTATTTGCACCTATCCACTGGATGTTATCCGAGCTCGCTTGGCATTTCAGGTGACAGGACACCATCGGTACACCGGCATAAGACATGCCTTTCAGACAATTTACCATAAGGAAGGAGGAATCTCTGGTTTTTACCGTGGTCTGATACCCACAATCATTGGCATGGCTCCATATGCAGgcttttcttttttcacatttGGTACACTGAAGACTTTGGGACTCACTCACTTTCCAGAGCAATTGGGAAAACCGTCTCTTGACAACCCTGATGTTTTAGTGCTGAAGACTCAAGTCAATCTGTTGTGTGGTGGAGTTGCTGGAGCGATTGCTCAAACTATATCGTATCCTTTAGATGTTGCCCGGAGGAGAATGCAGTTGGGTGCATCATTGCCTGATCATGACAAATGTTGCAGCCTCACCAAAACCCTCAAACATGTGTACAGCCAGTATGGTGTAAAGAAAGGCCTGTACCGCGGCCTGTCCCTCAACTACATCCGCTGTGTCCCGTCACAAGCCGTTGCCTTCACAACCTACGAGTTCATGAAGCAAGTTCTTCATCTTAACTAAAGCAAACAGTGACTAAAGCTTTACAGAAATAAACCCACACGACCCCTGGCGAAATCCCAGCAGCCCTTTCTGCCATTCCAGAGGCGATATCTTACAGAACAGAAAAACATCTACACCTTCCATCACATGTTGAACTATATGCCTTAACTAATCACTCATATACAATAAGCGAACACACAGAATGATTACGTCTTTCACATATAAGCAGTAATGCTTTTAACTACGACTGATGATGtcattttttttacgttaagagCCTAAATTGAGAAATCGGTTTTGTTTGCTGAGTTTGATTTACATGTAGCTTCATATTTCAGTCACCTCAAGTCTTATTGACTGATTTGTGTCCGTTTTAATGATCGAGATCAACTTGTCGCTACCGTTTTGTTAATATAGCGAATGGAAGAAAGTGTGTATGTATTTTTTCTATGCAGTGTTTAGTCACGTTCGCTTGCTGACTTTACTGTGGCTCATTTTTAATATCTGATAGATGCCTTACAGTTGGGATTCACAGTCTCTTTTATGAAAGAGAGCAATCATGTGAGAATGTTTGTGGTGATGGAAAAATCATAAGTCATGTTTATTAGTCTGTTAAATTATTGTTGACTGATTTGTGATGGGAACAAGTGGATCCCATGAAtacaataatgtaaaataataataaaattaattacaa

Function

symbol description
slc25a16 Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adaxial cell; alar plate midbrain region; immature eye; intestinal bulb; and optic tectum. Orthologous to human SLC25A16 (solute carrier family 25 member 16).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-3299 Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adaxial cell; alar plate midbrain region; immature eye; intestinal bulb; and optic tectum. Orthologous to human SLC25A16 (solute carrier family 25 member 16).

Ensembl:

ensembl_id ENSDARG00000057287

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012677 True 1767 mRNA 0.42 10 18179096 18195942

Neighbor

gene id symbol gene type direction distance location
XLOC_006546 alox5a coding downstream 4232 18128275 ~ 18174864 (-)
XLOC_006545 washc2c coding downstream 56763 18073211 ~ 18122333 (-)
XLOC_006544 zfand4 coding downstream 109675 18019709 ~ 18069421 (-)
XLOC_006543 march8 coding downstream 167888 17751866 ~ 18011208 (-)
XLOC_006542 vdac2 coding downstream 449622 17714296 ~ 17729474 (-)
XLOC_006548 si:dkey-228d14.5 coding upstream 136743 18332685 ~ 18345854 (-)
XLOC_006549 BX908770.1 coding upstream 325551 18521493 ~ 18548729 (-)
XLOC_006550 mat1a coding upstream 432978 18628920 ~ 18637244 (-)
XLOC_006551 CR932438.1 coding upstream 448948 18644890 ~ 18645005 (-)
XLOC_006552 CR932438.2 coding upstream 453550 18649492 ~ 18649682 (-)
XLOC_006471 BX537274.2 misc downstream 7914191 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 17352871 825904 ~ 826225 (-)
XLOC_006541 NA non-coding downstream 485277 17686484 ~ 17693819 (-)
XLOC_006540 NA non-coding downstream 648560 17494297 ~ 17530536 (-)
XLOC_006538 NA non-coding downstream 1300026 16868380 ~ 16879070 (-)
XLOC_006537 BX323467.1 non-coding downstream 1871213 16307767 ~ 16307883 (-)
XLOC_006536 NA non-coding downstream 1917523 16260651 ~ 16261573 (-)
XLOC_006554 CR932361.2 non-coding upstream 519368 18715310 ~ 18715426 (-)
XLOC_006556 NA non-coding upstream 814230 19010172 ~ 19016833 (-)
XLOC_006557 NA non-coding upstream 1080231 19276173 ~ 19277332 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_05552106_05558265 SLC25A16 coding CI01180000 null 5551875 ~ 5559075 (+)