Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012667 |
| length | 732 |
| RNA type | processed_transcript |
| GC content | 0.46 |
| exon number | 5 |
| gene id | XLOC_006543 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 17751866 ~ 18011208 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006955 | immune response | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0002495 | antigen processing and presentation of peptide antigen via MHC class II | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0031901 | early endosome membrane | cellular_component |
| GO:0031902 | late endosome membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0042287 | MHC protein binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080204-8 | Predicted to enable MHC protein binding activity and ubiquitin protein ligase activity. Acts upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in early endosome membrane; late endosome membrane; and lysosome. Is expressed in blastomere and brain. Orthologous to human MARCHF8 (membrane associated ring-CH-type finger 8). |
| ensembl_id | ENSDART00000145609 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013775 | lncRNA | downstream | 17377 | 17751872 ~ 17757280 (-) | False | XLOC_006543 |
| TCONS_00013472 | lncRNA | downstream | 80838 | 17690661 ~ 17693819 (-) | True | XLOC_006541 |
| TCONS_00013471 | lncRNA | downstream | 83993 | 17686484 ~ 17690664 (-) | False | XLOC_006541 |
| TCONS_00013774 | lncRNA | downstream | 244121 | 17521005 ~ 17530536 (-) | True | XLOC_006540 |
| TCONS_00013771 | lncRNA | downstream | 244222 | 17494297 ~ 17530435 (-) | False | XLOC_006540 |
| TCONS_00012676 | lncRNA | upstream | 307114 | 18167461 ~ 18174826 (-) | True | XLOC_006546 |
| TCONS_00013474 | lncRNA | upstream | 1149825 | 19010172 ~ 19016833 (-) | False | XLOC_006556 |
| TCONS_00013473 | lncRNA | upstream | 1149825 | 19010172 ~ 19016833 (-) | True | XLOC_006556 |
| TCONS_00013475 | lncRNA | upstream | 1415826 | 19276173 ~ 19277332 (-) | True | XLOC_006557 |
| TCONS_00013476 | lncRNA | upstream | 1478130 | 19338477 ~ 19339436 (-) | True | XLOC_006558 |
| TCONS_00012661 | mRNA | downstream | 45183 | 17714296 ~ 17729474 (-) | False | XLOC_006542 |
| TCONS_00012662 | mRNA | downstream | 51240 | 17714446 ~ 17723417 (-) | True | XLOC_006542 |
| TCONS_00012660 | mRNA | downstream | 310003 | 17365892 ~ 17464654 (-) | True | XLOC_006539 |
| TCONS_00012659 | mRNA | downstream | 310295 | 16922705 ~ 17464362 (-) | False | XLOC_006539 |
| TCONS_00012657 | mRNA | downstream | 1516809 | 16230556 ~ 16257848 (-) | True | XLOC_006535 |
| TCONS_00012669 | mRNA | upstream | 159362 | 18019709 ~ 18069421 (-) | False | XLOC_006544 |
| TCONS_00012670 | mRNA | upstream | 185611 | 18045958 ~ 18069421 (-) | True | XLOC_006544 |
| TCONS_00012671 | mRNA | upstream | 212864 | 18073211 ~ 18119696 (-) | False | XLOC_006545 |
| TCONS_00012672 | mRNA | upstream | 213266 | 18073613 ~ 18105278 (-) | False | XLOC_006545 |
| TCONS_00012673 | mRNA | upstream | 216504 | 18076851 ~ 18088229 (-) | False | XLOC_006545 |
| TCONS_00012658 | other | downstream | 1466774 | 16307767 ~ 16307883 (-) | True | XLOC_006537 |
| TCONS_00012624 | other | downstream | 3390119 | 14384421 ~ 14384538 (-) | True | XLOC_006518 |
| TCONS_00012619 | other | downstream | 4104120 | 13670440 ~ 13670537 (-) | True | XLOC_006513 |
| TCONS_00012616 | other | downstream | 4130095 | 13644445 ~ 13644562 (-) | True | XLOC_006511 |
| TCONS_00012615 | other | downstream | 4184087 | 13587296 ~ 13590570 (-) | True | XLOC_006510 |
| TCONS_00012681 | other | upstream | 784543 | 18644890 ~ 18645005 (-) | True | XLOC_006551 |
| TCONS_00012682 | other | upstream | 789145 | 18649492 ~ 18649682 (-) | True | XLOC_006552 |
| TCONS_00012685 | other | upstream | 854963 | 18715310 ~ 18715426 (-) | True | XLOC_006554 |
| TCONS_00012693 | other | upstream | 2357143 | 20217490 ~ 20222092 (-) | False | XLOC_006562 |
| TCONS_00012694 | other | upstream | 2360194 | 20220541 ~ 20222134 (-) | True | XLOC_006562 |
