RNA id: TCONS_00012632


Basic Information

Item Value
RNA id TCONS_00012632
length 2561
lncRNA type lincRNA
GC content 0.34
exon number 4
gene id XLOC_006526
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15575137 ~ 15580152 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCCACCTACTGGATAGGAGTGTGGAGCGCATAATGTAGGAGAAGCACGAGTACAAAAGATATATGATACGAATGGAGGGATGAGATTACCAAAGGGAAGAGAGAACAGGAAGAAGAGTAGGAGGGgaggaaaaaaaacagtttaatacgatataaatttttaatttcttATGTTATGTTAAGTTATTCTTAAATTCTATTAATCAATTTTGTTTcctttaagtaattaattaattgcattattattttaacttgatTTGAACCGTTTCCTAATAGGGTCTGAAATGGTAAATTTTTTATCCCATAAATGCTTAATCCTTGAACTAATTGACATCTCTGATTTTCATATGCCACACATTCTGTAATTACATGTTCTAATGTTTCTATTTTCCCGCATTTATCACAACATCATCCTGTCTTATGCTTCCCTATTCTAAATTTATACTGGTTTAGCAAACAATGACCCACACGCAACCTAGTTATCACCACATCATTCCTTCTATTACCAAACTTATTTCTAGTACCACCCACACATCCATGAATATTATGAATATGTCTGCCTTTTTCTCCATTATCCCACTCCCTCTGCCACATTCTACCTGTTTCTTTTGCAATTATGTTTTTTACCTCTgacttacttatttttatttttatttctatttgatTATGTTGTAATGCTTCCTTTGCAAGTTGGTCTGCCTCTTCATTACCTACTTCTCCCATATGACCAGGAATCCACAAGAAGCTTACAAAAAGTCCACCCTGTCTGATTCTAAATACATTTTGCATGATCTCATTCATTATGTCCTGTCTTGCCTTAGAAGTTCAAGTAATTGCAAcacgttctcactcccaactcgtcatatactgacgcttggtcaggaaccctcggcgtaggttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatatgtacctgagcctgaggcgtcatagggagacgctggaggctcgtataattaccaatagatgtcaacgtaatttttaaaacctgattttacgcctattatcgcagttttcttattttaaaaatatgtaatttttattttatttaattttatttattattttattattttatttataattttattatcatcccttcacggtgagtttaacgcctttctgctattggtcaaactgcatcagcgctgagttctcagatgagttcaactgtcaacattaaatagtgtgttaatgctgcataatgtattttattggagattagttggtgtttataaatatgttatcatttacttcaAATTTAATGAGTGAAATTATACTCGGTTGCccagtttagggtaactatgcctaataaaactttgattcattcatattattattatttattttttactttaaaaaatattacatttcaagtactaagtttaaaaaatgtttttggctgatttttttcattttaaatgatttattgatgttcgggtcattgtatgtggcgatctattttttacagtctatggtcgcgatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaatcttttgacatatgaattcatcttgactaaggAACTCTTCACAGCACTGCATTTGAACAGTCACAACCCCACAGAGCAGCACAACCGCCCCACTCATGATCAGTGTTATGGTGCCATTTTAAAGCTGGAACCTCATCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGTGGCAAGACCTGGAATAACACCtgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcaGCATAAACACCTGGACTCACCAAGCACACTTTGGTTCTCAGTGTTTTTTGGTTctgtagtattttttaaaaacagcttttattgacttgatcagtatatatcagactattatatccaacattatttattgaacatagcataggtaatagtcttgctgatattctctcactcatttctcgtttgaaatgtgaatactttttccttttctacggggctctactcatcccctttgagtaaaagggcagttaacctatgtagatgtattatcttcaacatggacaagaaattgtattgtcacatgtacagttgtggtaaaaaaaaaataagctggAAAATAAGCTAAACATTAGTATCCTCTTTAATCACAAGTTATTAGCAATAGTAATCTATGTTCATCACAAATATTATGAGTTCAGAATTCTGGAAGTGTGTTTCATTAATGGTCATCATgtgatgtttaattgttttcactttatttgaaatatggacaaaagatcttttaaaatatgtaaatgtttataaatataaccTTTTTCAAGATGTATTTGTTTGACAACCACTCTTTATCTGActatttttactttctaaatcttcaactgtttgtgtaacaGTATGTTTTGATGACAAATGATGaacttgtgtttaataatgaccacataatgtctttgtcctgga

Function

GO:

id name namespace
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162686

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013469 lncRNA downstream 117513 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00013768 lncRNA downstream 593557 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00012627 lncRNA downstream 666168 14906407 ~ 14908969 (-) True XLOC_006520
TCONS_00013468 lncRNA downstream 1041883 14532720 ~ 14533254 (-) True XLOC_006519
TCONS_00013767 lncRNA downstream 1559957 14013185 ~ 14015180 (-) True XLOC_006516
TCONS_00012638 lncRNA upstream 105341 15685493 ~ 15696991 (-) True XLOC_006527
TCONS_00013769 lncRNA upstream 680499 16260651 ~ 16261573 (-) True XLOC_006536
TCONS_00013770 lncRNA upstream 1288228 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013771 lncRNA upstream 1914145 17494297 ~ 17530435 (-) False XLOC_006540
TCONS_00013772 lncRNA upstream 1940853 17521005 ~ 17526496 (-) False XLOC_006540
TCONS_00012631 mRNA downstream 432857 15091264 ~ 15142280 (-) True XLOC_006524
TCONS_00012630 mRNA downstream 493113 15020822 ~ 15082024 (-) True XLOC_006523
TCONS_00012628 mRNA downstream 645901 14915344 ~ 14929236 (-) False XLOC_006521
TCONS_00012629 mRNA downstream 648819 14922716 ~ 14926318 (-) True XLOC_006521
TCONS_00012626 mRNA downstream 666473 14902574 ~ 14908664 (-) False XLOC_006520
TCONS_00012633 mRNA upstream 101923 15682075 ~ 15700061 (-) False XLOC_006527
TCONS_00012634 mRNA upstream 101928 15682080 ~ 15700060 (-) False XLOC_006527
TCONS_00012635 mRNA upstream 102676 15682828 ~ 15702736 (-) False XLOC_006527
TCONS_00012636 mRNA upstream 105285 15685437 ~ 15700084 (-) False XLOC_006527
TCONS_00012637 mRNA upstream 105285 15685437 ~ 15702672 (-) False XLOC_006527
TCONS_00012624 other downstream 1190599 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 1904600 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 1930575 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 1984567 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 3089145 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012658 other upstream 727615 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 2194505 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 3064738 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 3069340 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 3135158 18715310 ~ 18715426 (-) True XLOC_006554

Expression Profile

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