RNA id: TCONS_00012630


Basic Information

Item Value
RNA id TCONS_00012630
length 1425
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_006523
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15020822 ~ 15082024 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACCGAGCTTCGCTTTTTTCCGAGCTCAGCCAAACAGCCCTACAGACAGCACTCAGACCTGCAATGCCTGAATCCACCGAGTTTCCTCCGTTTAGACTCGGCGAGTCTCGGTTTGATCAGGGATCATTTTATGGTAGGTTGAGACACTTCCTGGATGTGATTGACCCTCGCACACTCTTTGTATCAGGGagacgtttaaatgaatgtatgaaactCCTGGATCAGTTCAAAAATGGAACTCTTCCTCCAGGTGTGACTAATGGACAGCTTTGGAAAGCCCAGAAGATTAAGCAGGCCATCATCCATCCAGACACAGGAGAGAAGATCCCCATGCCCTTTCGCATGTCAGgttTTGTGCCCTTTGGTACTCCAGTGGTCGTAGGCCTATTGTTACCCAATCAGACATTTTCTTCTACCATCTTTTGGCAGTGGCTGAACCAGAGCCACAATGCCTGTGTCAACTACTGCAACCGTAATGCAACTAAGCCCACGCCAATATCAACGTTTTTCCAGGGTTACCTGGGTGCAGTCAGCAGTGCAGTTACTATCGCAGTGGGGCTGAATGTCCTTATTAAGAGAGCTGAGCATTTCAGTCCGGCTACGAGGATCCTGGTCCAGCGGTTCATCCCATTCCCTGCTGTCgCGAGTGCCAACGTGTGTAATGTTCTACTGATGCGCCACACTGAGCTGTCAGAAGGCATCAGTGTACTAGATGACAAAGGCAATGTGGTAGGCACCTCAAAACTGGCCGCTCGACATGCTTTGATAGAGACGTCCCTGACCCGTGTGGTGCTGCCCATGCCTGTTCTCCTGCTGCCGCCATTAGTGATGTCACTGCTGGAGAGGCTTCCTTTCCTGCAGAAACGTCCTCGTGTTACACTGCCGGTTCACAGCATGGTGTGTCTCTGTGCATTCGGCCTGGCGCTGCCTGTTGCCATCAGCCTGTTCCCCCAAAACAGTCAGATTCACGTATCGGAGCTGGAGCCGGAGATCTCTGCTGCTACACACTGCCAGATCCTAACCTACAACAAGGGTCTTTAACCAGTTAAAATGCTGGACATCTGCCAACTAATGTATTTTTCCCTGATGGTAAAATGCAAAGTGTTATTACAGTGTTTGATTGCTTCTTGCTGGATTGTTCCTGCTGTGCGTGAATCCTCTCTCAGCCTCACAAAGAGACTCACACCACTGCTAATCATAGGATTTCCATGTACTTGGCAAATAGAGGCTTTTAGTGTATTTAGAGcaaaaaaggtttatttttttaatttccccattattcttttatatttgctaatttatgtactattgataataataataattgtgtaaaaatgtttggATATCTTAAGcacatttaattaatattgtaCACAGAATTTATCTGGCTTTATGTTATTTTCTTAAAGTACATTTACAAACA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0015746 citrate transport biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015137 citrate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-174 Predicted to enable citrate transmembrane transporter activity. Predicted to be involved in citrate transport and mitochondrial transmembrane transport. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human SFXN5 (sideroflexin 5).

Ensembl:

ensembl_id ENSDART00000157482

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013768 lncRNA downstream 39242 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00012627 lncRNA downstream 111853 14906407 ~ 14908969 (-) True XLOC_006520
TCONS_00013468 lncRNA downstream 487568 14532720 ~ 14533254 (-) True XLOC_006519
TCONS_00013767 lncRNA downstream 1005642 14013185 ~ 14015180 (-) True XLOC_006516
TCONS_00013766 lncRNA downstream 1280262 13737542 ~ 13740560 (-) True XLOC_006514
TCONS_00013469 lncRNA upstream 374652 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00012632 lncRNA upstream 493113 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00013470 lncRNA upstream 493688 15575712 ~ 15578045 (-) True XLOC_006526
TCONS_00012638 lncRNA upstream 603469 15685493 ~ 15696991 (-) True XLOC_006527
TCONS_00013769 lncRNA upstream 1178627 16260651 ~ 16261573 (-) True XLOC_006536
TCONS_00012628 mRNA downstream 91586 14915344 ~ 14929236 (-) False XLOC_006521
TCONS_00012629 mRNA downstream 94504 14922716 ~ 14926318 (-) True XLOC_006521
TCONS_00012625 mRNA downstream 111823 14902318 ~ 14908999 (-) False XLOC_006520
TCONS_00012626 mRNA downstream 112158 14902574 ~ 14908664 (-) False XLOC_006520
TCONS_00012622 mRNA downstream 533298 14191293 ~ 14487524 (-) False XLOC_006517
TCONS_00012631 mRNA upstream 9240 15091264 ~ 15142280 (-) True XLOC_006524
TCONS_00012633 mRNA upstream 600051 15682075 ~ 15700061 (-) False XLOC_006527
TCONS_00012634 mRNA upstream 600056 15682080 ~ 15700060 (-) False XLOC_006527
TCONS_00012635 mRNA upstream 600804 15682828 ~ 15702736 (-) False XLOC_006527
TCONS_00012636 mRNA upstream 603413 15685437 ~ 15700084 (-) False XLOC_006527
TCONS_00012624 other downstream 636284 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 1350285 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 1376260 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 1430252 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 2534830 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012658 other upstream 1225743 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 2692633 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 3562866 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 3567468 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 3633286 18715310 ~ 18715426 (-) True XLOC_006554

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_04863395_04878213.mRNA True 1559 mRNA 0.47 18 CI01180000 4863048 ~ 4878213 (-)