XLOC_006520 (ap5s1)


Basic Information

Item Value
gene id XLOC_006520
gene name ap5s1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 14902318 ~ 14908999 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012625
GTGACCAAATACGGAAATAACCATGCAGTGGTTTTCTACAATGGCAGCATGACTTTATTATATTGCAGACATTCATTCCACCAAACTGgtgaatctatttatttatgagtTTAATGATGTGTTAAGTCAGATATGGTGCTGTGTTTCTTAATCCACACGGTGTGCCCGGTGAGCGCGCTGTCCGCTGGCGAGAGTCGGATTCTGTACTCGCGGCTGTTCGGAGCAGAGAGCGGAGATGATCGGGACTTCACACCAGAGCAAAAGAGACTGATGCAGAAGGAAAAACTGCAGGTGGTCGCGAGGCAGGTGAGAAGTGCGGTGTGTTTGAGCAGGGAGGCCTCAGGTCGTCTGTGTGTGGAGTCTGTTTTGGGTGAAGAGGCTGTAGCTCTGGGCGAAGCAGACAGCGGAGTGTTTTCCCTGGGAAGTGCAGAGTTGTTTCCAGATCGCAGTGCTGTCCTTTGGCTCGGGGTGCAGGCTTTGGCCTTCACGCTCATCTGCAGGCCACACGAAAACCTTCTGCTGGCTGAGGGAACGCTTCGCAACATCGCACGTCACTGTCTGGAGGAGCTGCGTCTGCTGGGACCCGGTGCTGAGgtgctgctgAAAAGTGATCGAGTGGACGCATTGTTGCACAGACTCCTTCCTCACGGCCAGCTCCTCTTCCTCAACCATCGTTTTGCCTTCAACCTGGAAAAAGAAATATCGGGCTACGTGAGCAAATGAAAGACTGTGTGCATTGGTAGAATCACACTAGAGAGCCATTTGGAGTGTAATTTATGAATCCATGATGGGAAGATTTGGAAGAAAGTGTAGTAAACAATGTAAGCCCTCAAAGTCATTAGGAAGGTTGAAGATTGCACCTATAAACTGTAACAGGAACTGGATTTCTCCTTTGAGGTAACCTGAAGGCACATGCTCTAAAGCGTTAATTGCAGGTTCACAGTAGATTAGTAGATTATATGGGGGGAAAGAGTGAaccttt
>TCONS_00012626
AACTACAACAATGCCCGCTGGATAGGCAGGTGAGAAGTGCGGTGTGTTTGAGCAGGGAGGCCTCAGGTCGTCTGTGTGTGGAGTCTGTTTTGGGTGAAGAGGCTGTAGCTCTGGGCGAAGCAGACAGCGGAGTGTTTTCCCTGGGAAGTGCAGAGTTGTTTCCAGATCGCAGTGCTGTCCTTTGGCTCGGGGTGCAGGCTTTGGCCTTCACGCTCATCTGCAGGCCACACGAAAACCTTCTGCTGGCTGAGGGAACGCTTCGCAACATCGCACGTCACTGTCTGGAGGAGCTGCGTCTGCTGGGACCCGGTGCTGAGgtgctgctgAAAAGTGATCGAGTGGACGCATTGTTGCACAGACTCCTTCCTCACGGCCAGCTCCTCTTCCTCAACCATCGTTTTGCCTTCAACCTGGAAAAAGAAATATCGGGCTACGTGAGCAAATGAAAG
>TCONS_00012627
GTTTTCTACAATGGCAGCATGACTTTATTATATTGCAGACATTCATTCCACCAAACTGgtgaatctatttatttatgagtTTAATGATGTGTTAAGTCAGATATGGTGCTGTGTTTCTTAATCCACACGGTGTGCCCGGTGAGCGCGCTGTCCGCTGGCGAGAGTCGGATTCTGTACTCGCGGCTGTTCGGAGCAGAGAGCGGAGATGATCGGGACTTCACACCAGAGCAAAAGAGACTGATGCAGAAGGAAAAACTGCAGGTGGTCGCGAGGCAGGTGAGAAGTGCGGTGTGTTTGAGCAGGGAGGCCTCAGGTCGTCTGTGTGTGGAGTCTGTTTTGGGTGAAGAGGCTGTAGCTCTGGGCGAAGCAGACAGCGGAGTGTTTTCCCTGGGAAGTGCAGAGTTGTTTCCAGATCGCAGTGCTGTCCTTTGGCTCGGGGTGCAGGCTTTGGCCTTCACGCTCATCTGCAGGCCACACGAAAACCTTCTGCTGGCTGAGGGAACGCTTCGCAACATCGCACGTCACTGTCTGGAGGAGCTGCGTCTGCTGGGACCCGGTGCTGAGGTCAGACTTTCATTGGACTAATGAGTGTTTTATTAGAGGAGCTGTTATTGTTTATGCTTGGAATTTTTGGATTTAAAT

Function

symbol description
ap5s1 Predicted to be involved in endosomal transport. Predicted to act upstream of or within double-strand break repair via homologous recombination. Predicted to be part of AP-type membrane coat adaptor complex. Predicted to be active in cytosol; late endosome; and lysosome. Orthologous to human AP5S1 (adaptor related protein complex 5 subunit sigma 1).

GO:

id name namespace
GO:0016197 endosomal transport biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005764 lysosome cellular_component
GO:0030119 AP-type membrane coat adaptor complex cellular_component
GO:0005770 late endosome cellular_component
GO:0005829 cytosol cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-090313-184 Predicted to be involved in endosomal transport. Predicted to act upstream of or within double-strand break repair via homologous recombination. Predicted to be part of AP-type membrane coat adaptor complex. Predicted to be active in cytosol; late endosome; and lysosome. Orthologous to human AP5S1 (adaptor related protein complex 5 subunit sigma 1).

Ensembl:

ensembl_id ENSDARG00000076755

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012625 False 982 mRNA 0.49 3 14902318 14908999
TCONS_00012626 False 449 mRNA 0.55 3 14902574 14908664
TCONS_00012627 True 642 lncRNA 0.51 2 14906407 14908969

Neighbor

gene id symbol gene type direction distance location
XLOC_006519 NA coding downstream 369064 14532720 ~ 14533254 (-)
XLOC_006517 gfra4a coding downstream 414794 14191293 ~ 14487524 (-)
XLOC_006518 AL928929.1 coding downstream 517780 14384421 ~ 14384538 (-)
XLOC_006516 NA coding downstream 887138 14013185 ~ 14015180 (-)
XLOC_006515 ky coding downstream 1148227 13743202 ~ 13754091 (-)
XLOC_006521 cdc25b coding upstream 6345 14915344 ~ 14929236 (-)
XLOC_006522 NA coding upstream 41796 14950795 ~ 14981580 (-)
XLOC_006523 sfxn5a coding upstream 111823 15020822 ~ 15082024 (-)
XLOC_006524 rab11fip5a coding upstream 182265 15091264 ~ 15142280 (-)
XLOC_006525 NA coding upstream 547677 15456676 ~ 15457624 (-)
XLOC_006471 BX537274.2 misc downstream 4637413 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 14076093 825904 ~ 826225 (-)
XLOC_006514 NA non-coding downstream 1161758 13737542 ~ 13740560 (-)
XLOC_006513 CR788322.4 non-coding downstream 1231781 13670440 ~ 13670537 (-)
XLOC_006526 BX511166.1 non-coding upstream 666138 15575137 ~ 15580152 (-)
XLOC_006536 NA non-coding upstream 1351652 16260651 ~ 16261573 (-)
XLOC_006537 BX323467.1 non-coding upstream 1398768 16307767 ~ 16307883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G681137 NA misc CI01180000 null 4783305 ~ 4785631 (+)