XLOC_006500 (si:dkey-20i10.7)


Basic Information

Item Value
gene id XLOC_006500
gene name si:dkey-20i10.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 12488863 ~ 12494575 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012603
GCAGAATTTCTGTGCCCTCGTGATGTTCCGCCATTTAGTCCGACAAGCGAAAAACCCAAACCagcaaaaccaaaccaaaccaaacaaaactaaaaaaaacctAAGTGGAAGATTGACAAACGCTGGGTAAGTTAGAGTAACATCAGTGAttgagaaaaatggtgaaaagGTGCTCATATGGGGACTGCAAAACAGATGAACGGTACCCAGAAAGGGTGATCAATATAAAATTTTATCCATTCCCCAAACCCTGCCGAAACCTGCAGAAGTGTTTGAAATGGTTACGTTTATGTGGAGGGCCTAACCGTCAACTGAATATGGACAAGCTGAGGATTCATTCCAAAGCCAAACACATCTATGTGTGTTCAAAgCACTTTGTTGATGGCCGGCCGACACCAGCCACTCCTGATCCTCTGCTATATGAACCAAGTGACGACACACCTGCAAGACGTATACGAAAACAAAACGATGCTGAAGACGGGAGATTTGGGTATGATCAACAAGGCGTTTCAGTTGATATTACAGTTGAGGTGGAGCCATCAGCAGAGGAGACCACTACAGAAGGGGATGCTATGGTCACTGAAATGGgcaaaccGCCATGTAAAATAGTAAAGTTTGATCCATCATTGCATCTTGGGGACACAGAAAACAAAACTGAATGTGTGCAGTTTAACCCATGTAAAGAGGGTGAAGAAGCTATCATTGGTGATGGCGCTCCACCTGCAACAATACTTGTAGCTGGCCAGGACAAAGCTGAAATAGCAGATGAAAGTCAGACGAGAGACGAAGGGTCAAATGATGACAATGCCGGACAGCAGGAGTGCCATTTTTGCAGCTCTATGCGTGATGAAATTGACCACCTGTTAAAGGAAAACCGAAAACTGAGGAAAGAGCTTGCTAAAAAAAACATGGGAGAGGACTCGTTTAAAGAGGACAATGCGAAGGTCAAGTACTACACTGGGCTACCGTGTTTTGTGATTCTGATGGGTGTGCTGACACAGCTTCTTCCCCACCTGCCACAGACTGGCCACAAACTCTCACCTTTTCAGATGCTCCTTTTAACACTGATGCGCCTCAAACTCAATCTGCCAGTTCAGCACATCGCATACCTCTTTTGTGTGGATCAAGATACGGTGTCCAACACGTTCAAAGATACTCTTGGCACTATGTTCCAACAACTTAAATCTCTCGTTCACTGGCCAGAAAGACATTACCTGCAAGCCACCATGCCACATCAGTTTGTTGAGGCTTTTGGCAGTTGTGTGCCAGTTATTGTGGACAGCTTTGAA

Function

symbol description
si:dkey-20i10.7 Predicted to enable DNA binding activity and metal ion binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-232 Predicted to enable DNA binding activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDARG00000075269

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012603 True 1289 mRNA 0.45 4 12488863 12494575

Neighbor

gene id symbol gene type direction distance location
XLOC_006499 lamtor3 coding downstream 2787 12479264 ~ 12486076 (-)
XLOC_006498 commd8 coding downstream 99115 12378074 ~ 12389748 (-)
XLOC_006497 NA coding downstream 370613 12117113 ~ 12118250 (-)
XLOC_006496 CR792443.1 coding downstream 382969 12105778 ~ 12105894 (-)
XLOC_006495 pprc1 coding downstream 467297 12007904 ~ 12021566 (-)
XLOC_006501 enpep coding upstream 49059 12543634 ~ 12581388 (-)
XLOC_006502 NA coding upstream 92422 12586997 ~ 12587412 (-)
XLOC_006503 lrit3b coding upstream 96933 12591508 ~ 12602920 (-)
XLOC_006504 adh8b coding upstream 138648 12633223 ~ 12646752 (-)
XLOC_006505 adh8a coding upstream 159400 12653975 ~ 12660318 (-)
XLOC_006471 BX537274.2 misc downstream 2223958 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 11662638 825904 ~ 826225 (-)
XLOC_006492 CR792443.2 non-coding downstream 514295 11974452 ~ 11974568 (-)
XLOC_006482 CR556710.1 non-coding downstream 923000 11565736 ~ 11565863 (-)
XLOC_006480 NA non-coding downstream 1043083 11442838 ~ 11445780 (-)
XLOC_006507 NA non-coding upstream 254077 12748652 ~ 12756661 (-)
XLOC_006510 NA non-coding upstream 1092721 13587296 ~ 13590570 (-)
XLOC_006511 CR788322.1 non-coding upstream 1149870 13644445 ~ 13644562 (-)
XLOC_006513 CR788322.4 non-coding upstream 1175865 13670440 ~ 13670537 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000179_00425808_00426689 NA coding CI01000179 null 425449 ~ 426710 (+)