RNA id: CI01180000_03813694_03819279.mRNA



Basic Information


Item Value
RNA id CI01180000_03813694_03819279.mRNA
length 1524
RNA type mRNA
GC content 0.43
exon number 8
gene id CI01180000_03813694_03819279
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3813348 ~ 3819317 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTCTGGATTCATCTCAGCAATACGACTACATTGGGAAATGGCCACTGCAGGAAAGGTGATCAAATGTAGGGCTGCCATTGCCTGGGAGCCCAATGCTCCTCTGGTAATAGAGGAAATAGAAGTCGCCCCACCTCAGGAAGGAGAAATACGCATCAAGGCAAAGAACAAGCAGGGTTTTCCCACTATCTTGGGACATGAGGGCGCTGGTGTGGTGGAGAGTGTTGGACCTGGAGTCACTGATTTCAAACCAGGTGATAAGGTCATTCCATGCACGATCACTCAGTGTGGAGAATGCAGATTCTGCAAGAGTCCAAAAACAAACCAGTGTGACCGCAACTGGATAAATAAATATGTTGATTTTATGTCTGATCCCACAACACATTTTACTTGTCGTGGTCAGCCCATCTTGCAGTTCATGGGCACCAGTACCTTCTCTGAGTACATCGTCATGAACCAGATTGCTGTGGCAAAGATTCACGATGATGCTCCACTCGACCGTGTGTGTCTGCTCGGCTGCGGCGTCTCTACTGGCTACGGAGCTGCTGTCAACACAGCTGGGGTTACACCAGGCTCAGTGTGTGCAGTCTTTGGACTGGGTGCAGTAGGTCTGGCTGCAGTCATGGGCTGTAAAAATGCTGGAGCCTCTCGCATCTTCGCCGTGGATATTAATGAACAAAAGTTTGAGAAGGCAAAGGTGTTTGGAGCCACTGATTTTCTGAATCCAAAAGCGTATAATAAACCAATCTCTGAAGTACTGGCAGAAATGACCAATGGAGGAGTGGATTTCTCACTCGAGTGTGTGGGCAACACTGAAGTAATGGGGAGCGCACTGGAGTCGTGTGTTAAAGGTTGGGGTGTGAGTGTTCTGGTTGGCTATACTGATACAGATTTTTCTACGCGACCAATTCAGCTCATGTATGGGAAAACCTGGAAGGGAACTCTATTCGGAGGTTATAAGGTCAAGGACATTCCAAAACTGGCTCAAGACTACATGACCGGCAAAATAAAGCTTGACGAGTTTATAACACACAAAATGAATCTGGAGGAGGTCAATGATGCCATTAACCTCATGAAGACTGGAGAATGGTATATTTCTTACCTTTTTCTGCATTTCAAGTTAACGCTGTCAGAAAGTTCTAACATTTTTTCCTATCTTACAGCATTCGATGCATTCTGAATATATCCAAATGAGAAGCAAATTATCTTCACTCAACTTCTACGCCAGTTTGAAACAGATGGGAATAGACTTCTCAGACTTACAGCAGACACAATCAATACTAGTTTAATGTACTGTAACTATTTCTAAAAGGTAAAATGATGGATTGAATCTGGTACTCCAGTTCTGCATGGCAAGAAATTTAATTGTTTCACCAAAAGCAACAACAATTCAATACAGAGGAACTTCTTGGATGATCTTTTCACCTGCTTTCATAAATCATTGTTAAAATTGCATTCCATTGTGATGATTGCTAGAAGTTTGGCATTTGTTGTACATTTAAAAAAAACTAACAAGTCCAAATAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU803874 lncRNA downstream 150196 3662735 ~ 3663152 (-) True G682743
TU803870 lncRNA downstream 154238 3658877 ~ 3659110 (-) True G682739
TU803864 lncRNA downstream 161137 3651714 ~ 3652211 (-) True G682733
TU803863 lncRNA downstream 161641 3651362 ~ 3651707 (-) True G682732
TU803857 lncRNA downstream 172741 3640358 ~ 3640607 (-) True G682726
TU803913 lncRNA upstream 25594 3844911 ~ 3845183 (-) True G682781
TU803914 lncRNA upstream 26045 3845362 ~ 3845698 (-) True G682782
TU803915 lncRNA upstream 29484 3848801 ~ 3849054 (-) True G682783
TU803932 lncRNA upstream 58787 3878104 ~ 3878332 (-) True G682799
TU803933 lncRNA upstream 59165 3878482 ~ 3878740 (-) True G682800
CI01180000_03789351_03795877.mRNA mRNA downstream 17151 3788671 ~ 3796197 (-) True CI01180000_03789351_03795877
CI01180000_03766003_03784047.mRNA mRNA downstream 28942 3765731 ~ 3784406 (-) True CI01180000_03766003_03784047
CI01180000_03695198_03697316.mRNA mRNA downstream 116032 3694823 ~ 3697316 (-) True CI01180000_03695198_03697316
CI01180000_03532881_03543896.mRNA mRNA downstream 269452 3532722 ~ 3543896 (-) True CI01180000_03532881_03543896
CI01180000_03512441_03530828.mRNA mRNA downstream 282520 3511851 ~ 3530828 (-) True CI01180000_03512441_03530828
CI01180000_03824786_03831186.mRNA mRNA upstream 5352 3824669 ~ 3831186 (-) True CI01180000_03824786_03831186
CI01180000_03983803_04002213.mRNA mRNA upstream 164169 3983486 ~ 4002655 (-) True CI01180000_03983803_04002213
CI01180000_04082957_04114030.mRNA mRNA upstream 263331 4082648 ~ 4114030 (-) True CI01180000_04082957_04114030
CI01180000_04131891_04133055.mRNA mRNA upstream 311641 4130958 ~ 4133136 (-) True CI01180000_04131891_04133055
CI01180000_04327538_04335433.mRNA mRNA upstream 508043 4327360 ~ 4336389 (-) True CI01180000_04327538_04335433
TU801483 other downstream 568391 3244350 ~ 3244957 (-) True G680603
TU801485 other downstream 793673 3019498 ~ 3019675 (-) False G680604
TU804315 other upstream 976943 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU804622 other upstream 1798890 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 1931727 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 2942758 6762075 ~ 6762844 (-) True G683673
TU805291 other upstream 3583830 7403147 ~ 7413132 (-) False G684018

Expression Profile