RNA id: CI01180000_07365562_07368471.mRNA


Basic Information

Item Value
RNA id CI01180000_07365562_07368471.mRNA
length 801
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01180000_07365562_07368471
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7365450 ~ 7368471 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATGTTAAATGCTCATGCTTCTTTCTTCTCAAAAACATCAAAAATCTTTATGATGCACTGATACTTTCAGAGGAATCAGTGTTCATGCATGTCTTTGCTCTCAGTGGCAACAACAACATGAAATCCTCAGCAAACGGATCCACCATGGCATCATCACCTCATCAATCAGAAAGCGTTTACCATGCAAATATCAATGACTTTTTCATACAGCACTGCAGCTGTGGTGCAGCCAGCCTAGCCTTCCAAGAGCTCAAGAGACACTTTCGCAGTGATCACTACAGCCCAACGGCATCAAGCGGCACGCTGTCTGACCTGACCACAATCCCTGAGGTCACGCGCATCCCCCTCAGGGCAGGCATGAGAGGTGGTGAGATGGGCTGCCAACCTGCTCTTCCTGTTTGGAAAAGGGGCCTGAATCGAAGAAGCTACACAGAGGGAGAGGCCAAGTACCTGAGTGACAGTGCTGAGGTCCTCTCTGCTCCTCACAGACGGGTGAGTGAGAACTATACTTGGGGAAGAGTGAAGGAACTGGTGAAGAAGACCAAACTGAGGAACCAGAGCAGGCTGGGACTGTCTTCAGGCTCCTTGAAGAGATCGTGTCCACAGCTTTACCGGTACTCCATCCATGTTTTCATAATAATTCAGGAGTTTCAGATCATTAGCACTCAAAACACTGGTCAGATTTGATCTCCCTCTGAAGGCTCATCGGATGTTATTTTATAAATAAACAGAATATTTATTTATTATTTCTAAAAGCCCGATCAACATTATTTCACAGACCATTGGTTTTGATATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805323 lncRNA downstream 16210 7348959 ~ 7349240 (-) True G684049
TU805294 lncRNA downstream 32301 7328754 ~ 7333149 (-) True G684020
TU805232 lncRNA downstream 72737 7290800 ~ 7292713 (-) True G683960
TU805231 lncRNA downstream 74732 7286938 ~ 7290718 (-) True G683959
TU805251 lncRNA downstream 170967 7194254 ~ 7194483 (-) True G683979
TU805328 lncRNA upstream 12230 7380701 ~ 7385464 (-) True G684054
TU805356 lncRNA upstream 163018 7531489 ~ 7532527 (-) True G684079
TU805408 lncRNA upstream 259405 7627876 ~ 7628101 (-) True G684128
TU805414 lncRNA upstream 363478 7731949 ~ 7802982 (-) True G684134
TU805427 lncRNA upstream 434529 7803000 ~ 7833188 (-) True G684147
CI01180000_07244068_07250348.mRNA mRNA downstream 114541 7244019 ~ 7250909 (-) True CI01180000_07244068_07250348
CI01180000_07146950_07151404.mRNA mRNA downstream 212355 7146451 ~ 7153095 (-) True CI01180000_07146950_07151404
CI01180000_07045235_07052218.mRNA mRNA downstream 313130 7044465 ~ 7052320 (-) True CI01180000_07045235_07052218
CI01180000_06984285_06989850.mRNA mRNA downstream 374779 6983493 ~ 6990671 (-) True CI01180000_06984285_06989850
CI01180000_06956161_06961385.mRNA mRNA downstream 404065 6956161 ~ 6961385 (-) True CI01180000_06956161_06961385
CI01180000_07379273_07380075.mRNA mRNA upstream 10732 7379203 ~ 7380075 (-) True CI01180000_07379273_07380075
CI01180000_07414269_07416328.mRNA mRNA upstream 45297 7413768 ~ 7416328 (-) True CI01180000_07414269_07416328
CI01180000_07417697_07426881.mRNA mRNA upstream 49053 7417524 ~ 7426881 (-) True CI01180000_07417697_07426881
CI01180000_07491283_07505536.mRNA mRNA upstream 122812 7491283 ~ 7505536 (-) True CI01180000_07491283_07505536
CI01180000_07536722_07547119.mRNA mRNA upstream 168001 7536472 ~ 7547119 (-) True CI01180000_07536722_07547119
TU804922 other downstream 602606 6762075 ~ 6762844 (-) True G683673
TU804519 other downstream 1609924 5751044 ~ 5755526 (-) False G683294
TU804622 other downstream 1746179 5618207 ~ 5619271 (-) True G683394
TU804315 other downstream 2567608 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU801483 other downstream 4120493 3244350 ~ 3244957 (-) True G680603
TU805291 other upstream 34676 7403147 ~ 7413132 (-) False G684018
TU805292 other upstream 35513 7403984 ~ 7413132 (-) True G684018
TU805347 other upstream 138419 7506890 ~ 7525654 (-) True G684071
TU805357 other upstream 210933 7579404 ~ 7582803 (-) True G684080
TU805466 other upstream 542290 7910761 ~ 7911208 (-) False G684182

Expression Profile