RNA id: TU805232



Basic Information


Item Value
RNA id TU805232
length 1889
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G683960
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7290800 ~ 7292713 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTGTAAATGTTACTGGATAATTTAGCTTACAGACCTGGACTAAAAAAAAAAAAAAAAATGATTTCATGGGGTCTTTAAAATATTTTTCCGCATTTAAAATTCTCTAGTAGTTGTATTAATCTTTTATTTCCAAAATAGCCAAAAAATCTGAAAAAGTATTACAATCTCTGATACTATTCAGATGACTTCTTGTCAGCTAAAAAATACCTGAACGATCCTTAGATTTGTCCAACATTATCATAGGACTAGGCATATAAGGACAATCCATTATGTATTTAGAGAATTTTATTGATATAATGTCCGGTTAAAACAGATGGACAATGTCTGAAAAGACAGAGAGGGCCTGACAGAAGTTCTTGCTGTGGGGTACAGTTTATATGCCTATAAATTTTGTGAATTGGACAAGAAGAGTATTTCAAGACAATGAAACTATTAGCTATGATAATTCAACCGCGGCTGTTTGCCTAGAGCTTAGTTGTTAATGAACTCAAATTTCCAACACAGAGATGTGAAGTATAGGGGCAACAAAAGGCCTGGCTGGCAGTCGGTGGATGGAGGTTGGCATCCGTATAAGGAAGGGGTGCGAGGGTGGCAGAGAGAGATGTACCTTGAGGCGCTTTAGGATTAGAGGGCTTATTGAGGGCATGTTGCGGACGGTGATGGGCAACATCTGCTGAGGTCACAAAGCACAGGTGGGACACGGTGCACAAAACCACCAGGCCACACAAGTTCACCAGGAGGCCAAAGGAAGGAAACGGGCCAGAGATAGAAGAGGAGGGGAAGGGAAAAAACAGAAAACAAATGTAAAAGAGAGTGAACAGTAAGGAAAAATCAAGCCAAGGGGATAGAGAGAGAGAGATGATGAAGAAGAAAGGAAAGACAGAGCCAAAAGGATTCAGCATCACTGAACAGAGTAACGGGTCCATCAGAGTGGAGTAATGTAGGTTTGCTATTTATAAATGTAAAAATTCTCAATATTAACACAATTATCAAATTAATTAGTTAAAAGAATATAAACTATGCCTTTGATTAAATGTTAATAATTTATAGTTGACTGACAGCCCTATTTAATTCAAATATATAACATTATCAATGATAATGTTTCTATGTCCATCTCCACTGTGACGGCACCTGTAACTCTGCAGCAATGCTGTGTAGATCAGGCTGGATTCAGTCTTGCTACAAAGAGAGTTTCGCAACAGACTTACTGCGGCCTGTCCTCCAGCACAGACGTTGACAATACGGCGTTTCTGTTGAGATCAGCAGCATTGCAAAGCAGATTGAAAAGTTATTGACCCATAGATATACCACTAATAGTTGATATTACCCTAAACACAACTTGCCTTCTTGTGAGATTTAGATGTAAAAATTTACATCTGCAATGATTCCAAAAGAACTGAAGACTACTGAAAATTATTCAATTTTGCATTCTAATTCTAATTTAAAACATTTTCAATGAGGTCTCAGACTTTTGGACCTTACTGTACATGGAATATACACTACTGTTCAATAGTTTCAGGTCTGTACATTTTTTAAAAATTAAAAGAATTATGTGGAATTATGATGATATTTAAAAGAAGTCTCTTACGCTCACCAAGCCTGTATTTATTTGATCAAAAATACAGTAAAAACTTTGAAAACATTGAAATATTATTACAATTTAAAATAACTATTTTCTATTTTACTATATTTTAAAATGTAATTTATTCTTGTGATCAAAGCTGAATTTTCAGCATAATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGTAATCATTTTAATACGCTTATTTGCTGCTCAAGAAACATTTATTATTATGATGTTGTGTTAAAAATAGTTGCGCTGCTTAAAAATGTTTTTTTTCAAGATTATTTGATGAATAGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU805231 lncRNA downstream 82 7286938 ~ 7290718 (-) True G683959
TU805251 lncRNA downstream 96317 7194254 ~ 7194483 (-) True G683979
TU805235 lncRNA downstream 118551 7172034 ~ 7172249 (-) True G683963
TU805153 lncRNA downstream 294007 6994830 ~ 6996793 (-) True G683893
TU805147 lncRNA downstream 307763 6982770 ~ 6983037 (-) True G683890
TU805294 lncRNA upstream 36041 7328754 ~ 7333149 (-) True G684020
TU805323 lncRNA upstream 56246 7348959 ~ 7349240 (-) True G684049
TU805328 lncRNA upstream 87988 7380701 ~ 7385464 (-) True G684054
TU805356 lncRNA upstream 238776 7531489 ~ 7532527 (-) True G684079
TU805408 lncRNA upstream 335163 7627876 ~ 7628101 (-) True G684128
CI01180000_07244068_07250348.mRNA mRNA downstream 39891 7244019 ~ 7250909 (-) True CI01180000_07244068_07250348
CI01180000_07146950_07151404.mRNA mRNA downstream 137705 7146451 ~ 7153095 (-) True CI01180000_07146950_07151404
CI01180000_07045235_07052218.mRNA mRNA downstream 238480 7044465 ~ 7052320 (-) True CI01180000_07045235_07052218
CI01180000_06984285_06989850.mRNA mRNA downstream 300129 6983493 ~ 6990671 (-) True CI01180000_06984285_06989850
CI01180000_06956161_06961385.mRNA mRNA downstream 329415 6956161 ~ 6961385 (-) True CI01180000_06956161_06961385
CI01180000_07365562_07368471.mRNA mRNA upstream 72737 7365450 ~ 7368471 (-) True CI01180000_07365562_07368471
CI01180000_07379273_07380075.mRNA mRNA upstream 86490 7379203 ~ 7380075 (-) True CI01180000_07379273_07380075
CI01180000_07414269_07416328.mRNA mRNA upstream 121055 7413768 ~ 7416328 (-) True CI01180000_07414269_07416328
CI01180000_07417697_07426881.mRNA mRNA upstream 124811 7417524 ~ 7426881 (-) True CI01180000_07417697_07426881
CI01180000_07491283_07505536.mRNA mRNA upstream 198570 7491283 ~ 7505536 (-) True CI01180000_07491283_07505536
TU804922 other downstream 527956 6762075 ~ 6762844 (-) True G683673
TU804519 other downstream 1535274 5751044 ~ 5755526 (-) False G683294
TU804622 other downstream 1671529 5618207 ~ 5619271 (-) True G683394
TU804315 other downstream 2492958 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU801483 other downstream 4045843 3244350 ~ 3244957 (-) True G680603
TU805291 other upstream 110434 7403147 ~ 7413132 (-) False G684018
TU805292 other upstream 111271 7403984 ~ 7413132 (-) True G684018
TU805347 other upstream 214177 7506890 ~ 7525654 (-) True G684071
TU805357 other upstream 286691 7579404 ~ 7582803 (-) True G684080
TU805466 other upstream 618048 7910761 ~ 7911208 (-) False G684182

Expression Profile