RNA id: TU805356


Basic Information

Item Value
RNA id TU805356
length 1039
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G684079
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7531489 ~ 7532527 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTGATTCCAAACCTGTACAACATACTTTCTTCTGTGGAACACAAAAGAAGATATTTTGAGAAATGTCTGTTTTGTTTTTCTGTCCATACAATGGAAGTCAATGGGGTCTGATGTTGTTTGGACCCAAGCATTCTTCAAAATCTTTTGTGTTCCACAGAAGTCAGTCAGTCATACAGGTTTGGAATGACAGTTTTCATACTTTTTCACTTCAATTTTTCAATATTTTTTTTGTTTTAGTTAACAAGAACACTGTCATAAAGTTATGAATGGCTTTAAAAGAGCTATGTTCACCTGCAGTCCAAAGCCGATTATGTGTATCTGATCTAAATTGACTGTCCACACTGTCTCTCGCAACTGTGTCCTGTGGTGCTCTTTAATTTTCCGGAATAGCCTTTCTGCGTTAATTTCTATGGCAGTGACGTTGTGTTGGTAGGCATACGCCAAAGACCACAACAGTAACGTGGAGGGGTTCGCAATACAGATGTCGTCTTATTTACAACATGACAAAATGTAGCCACCGCACTGGACTAAGTCTTCTCAGGCAGCGGAGAAAGGTAGGAGGCTGGTATGAGCGGCTTTATTCCGTGATGTCATCTGTGCCGAATTTCGTCCCCCTGCCAGATTATGACCCCCCTAGTATGGATAGGTTTAGGAGTAGGCGTGGGGGAGGGGTTAGGATTAGGGGTGGGGCTAAGATTAGGCAATCAGGTAGCGACTTCAACAAGGGGGGGTAATAATTTGGCAGGGAGTCGAAATTTGGCACAACACCGGTCTCAAAACACATCTCTATTGCAAGCTTCTGCTTGACCGACACTTTGCAACAACACAACCTTGTTTCTGCAGAGACTTTCAGCATGTTTCCTTAACATTTAACGTGGCATGAGAAAGTGACAAAACAAGCCAAAATCCATATAGAGCAGTCTGACTGAAATGGATTTCCAGAAATGTGATTTGAATAGGATTTTAAAACACATATGAATGTAGCTGAAAACAGATTTGTAAAAATCACAATTCATGTGATTTTTTTGCCGTTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805328 lncRNA downstream 146025 7380701 ~ 7385464 (-) True G684054
TU805323 lncRNA downstream 182249 7348959 ~ 7349240 (-) True G684049
TU805294 lncRNA downstream 198340 7328754 ~ 7333149 (-) True G684020
TU805232 lncRNA downstream 238776 7290800 ~ 7292713 (-) True G683960
TU805231 lncRNA downstream 240771 7286938 ~ 7290718 (-) True G683959
TU805408 lncRNA upstream 95349 7627876 ~ 7628101 (-) True G684128
TU805414 lncRNA upstream 199422 7731949 ~ 7802982 (-) True G684134
TU805427 lncRNA upstream 270473 7803000 ~ 7833188 (-) True G684147
TU805430 lncRNA upstream 301846 7834373 ~ 7834663 (-) True G684150
TU805432 lncRNA upstream 307081 7839608 ~ 7839813 (-) True G684152
CI01180000_07491283_07505536.mRNA mRNA downstream 25953 7491283 ~ 7505536 (-) True CI01180000_07491283_07505536
CI01180000_07417697_07426881.mRNA mRNA downstream 104608 7417524 ~ 7426881 (-) True CI01180000_07417697_07426881
CI01180000_07414269_07416328.mRNA mRNA downstream 115161 7413768 ~ 7416328 (-) True CI01180000_07414269_07416328
CI01180000_07379273_07380075.mRNA mRNA downstream 151414 7379203 ~ 7380075 (-) True CI01180000_07379273_07380075
CI01180000_07365562_07368471.mRNA mRNA downstream 163018 7365450 ~ 7368471 (-) True CI01180000_07365562_07368471
CI01180000_07536722_07547119.mRNA mRNA upstream 3945 7536472 ~ 7547119 (-) True CI01180000_07536722_07547119
CI01180000_07598849_07621310.mRNA mRNA upstream 65706 7598233 ~ 7621310 (-) True CI01180000_07598849_07621310
CI01180000_07631328_07632833.mRNA mRNA upstream 98628 7631155 ~ 7632833 (-) True CI01180000_07631328_07632833
CI01180000_07634809_07642632.mRNA mRNA upstream 101458 7633985 ~ 7643019 (-) True CI01180000_07634809_07642632
CI01180000_07664300_07675535.mRNA mRNA upstream 131327 7663854 ~ 7675535 (-) True CI01180000_07664300_07675535
TU805347 other downstream 5835 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 118357 7403147 ~ 7413132 (-) False G684018
TU805292 other downstream 118357 7403984 ~ 7413132 (-) True G684018
TU804922 other downstream 768645 6762075 ~ 6762844 (-) True G683673
TU804519 other downstream 1775963 5751044 ~ 5755526 (-) False G683294
TU805357 other upstream 46877 7579404 ~ 7582803 (-) True G684080
TU805466 other upstream 378234 7910761 ~ 7911208 (-) False G684182
TU805835 other upstream 1190166 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 2365897 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 3809089 11341616 ~ 11343496 (-) True G686052

Expression Profile