Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU806323 |
| length | 1461 |
| RNA type | TUCP |
| GC content | 0.50 |
| exon number | 9 |
| gene id | G684929 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 9895316 ~ 9901388 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU806390 | lncRNA | downstream | 13939 | 9884281 ~ 9884485 (-) | True | G684994 |
| TU806388 | lncRNA | downstream | 34822 | 9863281 ~ 9863602 (-) | True | CI01180000_09862542_09863408 |
| TU806332 | lncRNA | downstream | 38980 | 9857548 ~ 9859444 (-) | True | G684936 |
| TU806363 | lncRNA | downstream | 115465 | 9782760 ~ 9782959 (-) | True | G684967 |
| TU806357 | lncRNA | downstream | 132831 | 9765211 ~ 9765593 (-) | True | G684961 |
| TU806404 | lncRNA | upstream | 44617 | 9946005 ~ 9946235 (-) | True | G685008 |
| TU806405 | lncRNA | upstream | 46966 | 9948354 ~ 9948919 (-) | True | G685009 |
| TU806985 | lncRNA | upstream | 168054 | 10069442 ~ 10070214 (-) | True | G685534 |
| TU807060 | lncRNA | upstream | 375029 | 10276417 ~ 10290496 (-) | True | G685593 |
| TU807102 | lncRNA | upstream | 433615 | 10335003 ~ 10335229 (-) | True | G685630 |
| CI01180000_09889952_09893572.mRNA | mRNA | downstream | 4852 | 9889442 ~ 9893572 (-) | True | CI01180000_09889952_09893572 |
| CI01180000_09880982_09883947.mRNA | mRNA | downstream | 14234 | 9880810 ~ 9884190 (-) | True | CI01180000_09880982_09883947 |
| CI01180000_09862542_09863408.mRNA | mRNA | downstream | 34664 | 9862136 ~ 9863760 (-) | False | CI01180000_09862542_09863408 |
| CI01180000_09797406_09801305.mRNA | mRNA | downstream | 97103 | 9797093 ~ 9801321 (-) | True | CI01180000_09797406_09801305 |
| CI01180000_09712937_09715071.mRNA | mRNA | downstream | 182876 | 9712731 ~ 9715548 (-) | False | CI01180000_09712937_09715071 |
| CI01180000_10043847_10061741.mRNA | mRNA | upstream | 142413 | 10043801 ~ 10062468 (-) | True | CI01180000_10043847_10061741 |
| CI01180000_10128340_10143434.mRNA | mRNA | upstream | 226592 | 10127980 ~ 10143930 (-) | True | CI01180000_10128340_10143434 |
| CI01180000_10179967_10185510.mRNA | mRNA | upstream | 278392 | 10179780 ~ 10185510 (-) | True | CI01180000_10179967_10185510 |
| CI01180000_10373880_10377493.mRNA | mRNA | upstream | 471642 | 10373030 ~ 10378736 (-) | True | CI01180000_10373880_10377493 |
| CI01180000_10441696_10442635.mRNA | mRNA | upstream | 540259 | 10441647 ~ 10442666 (-) | True | CI01180000_10441696_10442635 |
| TU805835 | other | downstream | 1174557 | 8722693 ~ 8723867 (-) | True | G684493 |
| TU805466 | other | downstream | 1987216 | 7910761 ~ 7911208 (-) | False | G684182 |
| TU805357 | other | downstream | 2315621 | 7579404 ~ 7582803 (-) | True | G684080 |
| TU805347 | other | downstream | 2372770 | 7506890 ~ 7525654 (-) | True | G684071 |
| TU805291 | other | downstream | 2485292 | 7403147 ~ 7413132 (-) | False | G684018 |
| TU807544 | other | upstream | 1440228 | 11341616 ~ 11343496 (-) | True | G686052 |
