RNA id: TU807060


Basic Information

Item Value
RNA id TU807060
length 395
lncRNA type read_through
GC content 0.53
exon number 3
gene id G685593
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 10276417 ~ 10290496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGTGGCACACGTTGGCATGGTTGTTACATCTGCAGGCTTGGCATTTCCCTCCATTAGTTGGATCTCCATAGTAACCAGGTAAACAGATCTGGCACTGCGGCCCAGTTGTGAGATTCTTGCACTGCTCACATACACTGCCATTAACACACACACTGTGTCCGTTACACTGACATGCTGGGCAGGTTATGTAGGCCCAGTCATAGCCTTTTTCCTTCGAACAGATACTGGTGTCCAACACCCTCTCTCGGCTCTGTCTGCTCAGGCTCCTCATTGGTCCACGGTATGATCCCTCAATACACTGGCCCTGACCTGTGTCCGTGGGGTCTCCGCACCAACCACAATCAGGCTGTCCCAGGCACTGACCACATGTACGATGACCTGAACAGTTCTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806985 lncRNA downstream 206203 10069442 ~ 10070214 (-) True G685534
TU806405 lncRNA downstream 327498 9948354 ~ 9948919 (-) True G685009
TU806404 lncRNA downstream 330182 9946005 ~ 9946235 (-) True G685008
TU806325 lncRNA downstream 377720 9895316 ~ 9898697 (-) False G684929
TU806390 lncRNA downstream 391932 9884281 ~ 9884485 (-) True G684994
TU807102 lncRNA upstream 44507 10335003 ~ 10335229 (-) True G685630
TU807103 lncRNA upstream 45145 10335641 ~ 10335879 (-) True G685631
TU807183 lncRNA upstream 240090 10530586 ~ 10530860 (-) True G685709
TU807191 lncRNA upstream 264743 10555239 ~ 10555443 (-) True G685717
TU807202 lncRNA upstream 306497 10596993 ~ 10597368 (-) True G685728
CI01180000_10179967_10185510.mRNA mRNA downstream 90907 10179780 ~ 10185510 (-) True CI01180000_10179967_10185510
CI01180000_10128340_10143434.mRNA mRNA downstream 132487 10127980 ~ 10143930 (-) True CI01180000_10128340_10143434
CI01180000_10043847_10061741.mRNA mRNA downstream 213949 10043801 ~ 10062468 (-) True CI01180000_10043847_10061741
CI01180000_09889952_09893572.mRNA mRNA downstream 382845 9889442 ~ 9893572 (-) True CI01180000_09889952_09893572
CI01180000_09880982_09883947.mRNA mRNA downstream 392227 9880810 ~ 9884190 (-) True CI01180000_09880982_09883947
CI01180000_10373880_10377493.mRNA mRNA upstream 82534 10373030 ~ 10378736 (-) True CI01180000_10373880_10377493
CI01180000_10441696_10442635.mRNA mRNA upstream 151151 10441647 ~ 10442666 (-) True CI01180000_10441696_10442635
CI01180000_10449079_10461033.mRNA mRNA upstream 158492 10448988 ~ 10461033 (-) True CI01180000_10449079_10461033
CI01180000_10521190_10523609.mRNA mRNA upstream 230337 10520833 ~ 10523625 (-) True CI01180000_10521190_10523609
CI01180000_10538157_10538596.mRNA mRNA upstream 246581 10537077 ~ 10538596 (-) True CI01180000_10538157_10538596
TU806323 other downstream 375029 9898424 ~ 9901388 (-) True G684929
TU805835 other downstream 1552550 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 2365209 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 2693614 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 2750763 7506890 ~ 7525654 (-) True G684071
TU807544 other upstream 1051120 11341616 ~ 11343496 (-) True G686052

Expression Profile