RNA id: TU806405


Basic Information

Item Value
RNA id TU806405
length 566
lncRNA type intronic
GC content 0.38
exon number 1
gene id G685009
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 9948354 ~ 9948919 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAGAATGCATATCAACATTACAATTTGGAGACTGCAGTTAGCTAATAATGTAATAATTTAGGCGATTAACATACAATCACTGTTAGCAATTTAATTGGAGGTAGAAGCAAAGAGCTCCTGGAAAAATGAATTACATATTAACAATAATTAGGATTTATAGAATGTGAATGTGCGTGTTGATCCAGATGTTGCATCTTCTGAAGTCATCGCAGGAGTTGGCGCCGTCTCTTCCAAAGTTTTAGTCATCTGAGGTCTTCTTAAGAGGCTGGATCCAAACTGAAACTGATGTACTCTCTAGTCAAAAACAGAAAAGCAAATGGAGAATAATTAGCATAGCTGCTGTTCATAACATTAAGCAAAGATAGTCATGTGCAATTGATCTGATATGAGATGGATTATGTGAATGCTTGGCGCTATTCCAGAGTTTAGGAGCCAAATGTGAAAACGCTCTCCCTCCTTTAGAGGACTTAGCTATCCTAGGTACAACCAGAAGTCCAGAGTTTTGTGATCTTAAAGAGCGTGAAGGATTGTAGGGCGATAAAAGATCGGTTAAGTACACAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806404 lncRNA downstream 2119 9946005 ~ 9946235 (-) True G685008
TU806325 lncRNA downstream 49657 9895316 ~ 9898697 (-) False G684929
TU806390 lncRNA downstream 63869 9884281 ~ 9884485 (-) True G684994
TU806388 lncRNA downstream 84752 9863281 ~ 9863602 (-) True CI01180000_09862542_09863408
TU806332 lncRNA downstream 88910 9857548 ~ 9859444 (-) True G684936
TU806985 lncRNA upstream 120523 10069442 ~ 10070214 (-) True G685534
TU807060 lncRNA upstream 327498 10276417 ~ 10290496 (-) True G685593
TU807102 lncRNA upstream 386084 10335003 ~ 10335229 (-) True G685630
TU807103 lncRNA upstream 386722 10335641 ~ 10335879 (-) True G685631
TU807183 lncRNA upstream 581667 10530586 ~ 10530860 (-) True G685709
CI01180000_09889952_09893572.mRNA mRNA downstream 54782 9889442 ~ 9893572 (-) True CI01180000_09889952_09893572
CI01180000_09880982_09883947.mRNA mRNA downstream 64164 9880810 ~ 9884190 (-) True CI01180000_09880982_09883947
CI01180000_09862542_09863408.mRNA mRNA downstream 84594 9862136 ~ 9863760 (-) False CI01180000_09862542_09863408
CI01180000_09797406_09801305.mRNA mRNA downstream 147033 9797093 ~ 9801321 (-) True CI01180000_09797406_09801305
CI01180000_09712937_09715071.mRNA mRNA downstream 232806 9712731 ~ 9715548 (-) False CI01180000_09712937_09715071
CI01180000_10043847_10061741.mRNA mRNA upstream 94882 10043801 ~ 10062468 (-) True CI01180000_10043847_10061741
CI01180000_10128340_10143434.mRNA mRNA upstream 179061 10127980 ~ 10143930 (-) True CI01180000_10128340_10143434
CI01180000_10179967_10185510.mRNA mRNA upstream 230861 10179780 ~ 10185510 (-) True CI01180000_10179967_10185510
CI01180000_10373880_10377493.mRNA mRNA upstream 424111 10373030 ~ 10378736 (-) True CI01180000_10373880_10377493
CI01180000_10441696_10442635.mRNA mRNA upstream 492728 10441647 ~ 10442666 (-) True CI01180000_10441696_10442635
TU806323 other downstream 46966 9898424 ~ 9901388 (-) True G684929
TU805835 other downstream 1224487 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 2037146 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 2365551 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 2422700 7506890 ~ 7525654 (-) True G684071
TU807544 other upstream 1392697 11341616 ~ 11343496 (-) True G686052

Expression Profile