RNA id: TU806332


Basic Information

Item Value
RNA id TU806332
length 565
lncRNA type antisense_over
GC content 0.45
exon number 6
gene id G684936
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 9857548 ~ 9859444 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAGCACTCAAGACATTTGCAATTCCAATACGGTGGGGTGCAGATCTGTTACCCCCATTGCCATGGAGGTAGATGAAAATTGGCGATCCATCCCCCAGAGCTTTTTCATACCACTCTAGATTCTGCCCCTGCGCCTCCTTCCATCTATGTTCAGGTACGGTATACCACACGCCCACTCTCACTCCCTCCTCTGGTTTGAGGTAGATATTTATAGTGTGATTGAGACCTATATCCGAAGGTCGGCTGAGGTCAACATAGTCAGAGAAGAGATACAGAAGAAATGGTACTGTTGCAGAAAGCACACACACTGAAAGGAGTCCCATTTTAGTCCAAGTCCACACCCACTGAGATCTTGGATGCTCATTTAAATCCTTAGGTTTCTGCAATCTCCCTGCAGACTGAAATTTTCTTTCAGATTTATTGATTCTTCGCTTCATTTTGAAGAGCAGGGAACACTCTCAACGTTTACTTTACACAACTTTGGCAATAATTGGCAAACAAACCGTGCAACTCACGGAAATGGATGGGTGTAAAGAGCAAAGAGCATGGACTGGGCTTATGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU806363 lncRNA downstream 74589 9782760 ~ 9782959 (-) True G684967
TU806357 lncRNA downstream 91955 9765211 ~ 9765593 (-) True G684961
TU806355 lncRNA downstream 103321 9752749 ~ 9754227 (-) True G684959
TU806352 lncRNA downstream 106752 9750571 ~ 9750796 (-) True G684956
TU806342 lncRNA downstream 116775 9740549 ~ 9740773 (-) True G684946
TU806388 lncRNA upstream 3837 9863281 ~ 9863602 (-) True CI01180000_09862542_09863408
TU806390 lncRNA upstream 24837 9884281 ~ 9884485 (-) True G684994
TU806325 lncRNA upstream 35872 9895316 ~ 9898697 (-) False G684929
TU806404 lncRNA upstream 86561 9946005 ~ 9946235 (-) True G685008
TU806405 lncRNA upstream 88910 9948354 ~ 9948919 (-) True G685009
CI01180000_09797406_09801305.mRNA mRNA downstream 56227 9797093 ~ 9801321 (-) True CI01180000_09797406_09801305
CI01180000_09712937_09715071.mRNA mRNA downstream 142000 9712731 ~ 9715548 (-) False CI01180000_09712937_09715071
CI01180000_09568657_09570949.mRNA mRNA downstream 286420 9567425 ~ 9571128 (-) True CI01180000_09568657_09570949
CI01180000_09515348_09519388.mRNA mRNA downstream 338160 9514397 ~ 9519388 (-) True CI01180000_09515348_09519388
CI01180000_09389794_09446057.mRNA mRNA downstream 411491 9389794 ~ 9446057 (-) True CI01180000_09389794_09446057
CI01180000_09862542_09863408.mRNA mRNA upstream 2692 9862136 ~ 9863760 (-) False CI01180000_09862542_09863408
CI01180000_09880982_09883947.mRNA mRNA upstream 21366 9880810 ~ 9884190 (-) True CI01180000_09880982_09883947
CI01180000_09889952_09893572.mRNA mRNA upstream 29998 9889442 ~ 9893572 (-) True CI01180000_09889952_09893572
CI01180000_10043847_10061741.mRNA mRNA upstream 184357 10043801 ~ 10062468 (-) True CI01180000_10043847_10061741
CI01180000_10128340_10143434.mRNA mRNA upstream 268536 10127980 ~ 10143930 (-) True CI01180000_10128340_10143434
TU805835 other downstream 1133681 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 1946340 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 2274745 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 2331894 7506890 ~ 7525654 (-) True G684071
TU805292 other downstream 2444416 7403984 ~ 7413132 (-) True G684018
TU806323 other upstream 38980 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 1482172 11341616 ~ 11343496 (-) True G686052

Expression Profile