RNA id: TU807544


Basic Information

Item Value
RNA id TU807544
length 1881
RNA type TUCP
GC content 0.42
exon number 1
gene id G686052
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 11341616 ~ 11343496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAAGATACACAGTACTTCTTGCCGTGCAGCTCTTAAAGTAAACATATGTTTTGCATTATCTTTACTATGTACTAACGTTACTTTTAACTGTGTATTGACTTTTACCCTGCTCTAGATTCCTTATCTTCTGACAATGAAGCGTTTCCTACGGTAGACTTAAGGAAACATTCTCCTTGTTTAATTACTTAATATGAATTGTGTTTAATGCAAGTCACTTCTTTGCAGGTTGATAGAGGTTACTTTGCCATCTTTATGGGAAGACTATATTATTTTGAACAAATCAGAAGGATGGATTGTTTTCTAGGAACGCTGACAGACAACAGGATCAGAAATACACACAATTACATCAGAGTAAAAGCAGTTACATAGCAGGTAAAATTGAAAAGTTATTTTTAAAATATGCATTACATTAAATACAGAGCACATTTCATCACTTCTTGTGAATTGTGTTAAGGCTCATGAAACCGAGAGATGAATAGGCCAAGAATGTCTTGTATAAAAGGCACACAGCCTTCATACCCAAGAGTGATCCTCCTCCTCTTCAAATAGCCCTCATTTTACATAAAAGAAACTACTTTATCACTCTTTTCCTTGCTCTTATATTCTTGCTTCTGCATATGCACTGACCTGATCTATTCAAACTAAGAAAGAATGCAAAAGGATGAGAAACAGGTGGAGGAGAAAGTGCAGAAACAATGAAGAATCGTGTGTTATTCTGGTTGTGGTGCGCTATGTCAGAGCGGATTTGGATAGAGCACAAGCATAAAAGCAAAAGGTAGGAGAATGAGAGAGGCGTGAGGAGGAGTGCAAGGCAGAGGCATGTCAGAGAAAGAACAGATAGATGAGAAAGTGAACCAGGGGGTGGATAAGAGAACACTGGTCCACGACCAAGTGAAGAACAATGTAAGTACTTTAGTATTTCCTATTAAATCAATGCCACTACTTGCATAATTTTCTATAGTCAAATAACTGGATCATCAGATAAAGATCCAGTAACATCTACATTAAGTGCTTATGGAGTCACATGTAATCAAATTCATTCTGCTCTTATCTGAATCCCATTAACAGTAGATGATCTGAACTTTACAGTAAAATCCATTGCATCATACAGATGGGAACTTCTTTCTAATATACTCACACCTGTTGAACTACTGTGTAAAAATCCTAGTTTACGATGCAGGCAGGATATCAAGAGTTCCTGATGTCAACACACTGTGCCATGAATTGTCTTTCAAAGATGAGTGAAATGGACTGCCAGAATAAAATAGCTTTGTGGATCTTGTTCACAACTACCTCTACAAGTACAAAGCGGCCCTTTGCATACGGGTTCCCACCTTTTTGAACAAGGCCTTGAGTTTGCAGACTTTGCAGGTACTCTTGGATCTGGCCTTTCTGTTTATGCTGTCTGGTTCCTCATCATCCCCTTCATCTCCTGCCTCTTCCTGACCTAGCCAAGGAGTCCACACCCCTCCATGAAGTTGCGGATCCGCCATTGGGTCGTCCGGTGGATTGCGTGGAGACACAGCAGTCCGGTTGTACTCGGCAAGCCGGGTCAAGAGCACCTTGACCACCTCAGGCCGTGCCTCTGCCAAATCTGCCCTCTCGTAGGGATCAGCAGTAACATTGAAAAGCCAGACAGACTTCCCTCGCTGGTCTCGTCTCTTTTCCATGCCCTGCCACTGATGCGGACCTCCTGGCATTGTCTGTGGAGGGAACCAGTCTCCATCGCCTACATTTCCTGTCAGAAGTTTCCAGTCACCAGCTCGAATGGCTGCACGCACTCCTGTATCCCAGATCCCAAAACCATTAAGAGTTAAGAGTCTCGGGTCAACTTCTCCATGCCTGCGTGACACTGGGTCAATGTTGAAGAGGATTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU807542 lncRNA downstream 6398 11334261 ~ 11335218 (-) True G686050
TU807526 lncRNA downstream 160642 11179237 ~ 11180974 (-) True G686034
TU807525 lncRNA downstream 160848 11179237 ~ 11180768 (-) False G686034
TU807481 lncRNA downstream 185135 11153359 ~ 11156481 (-) True G685993
TU807503 lncRNA downstream 192851 11148551 ~ 11148765 (-) True G686014
TU807613 lncRNA upstream 753 11344249 ~ 11344713 (-) True G686120
TU807614 lncRNA upstream 1348 11344844 ~ 11345165 (-) True G686121
TU807616 lncRNA upstream 2893 11346389 ~ 11346615 (-) True G686123
TU807617 lncRNA upstream 3704 11347200 ~ 11347603 (-) True G686124
TU807540 lncRNA upstream 71893 11415389 ~ 11418016 (-) True G686048
CI01180000_11127163_11138849.mRNA mRNA downstream 202767 11126317 ~ 11138849 (-) True CI01180000_11127163_11138849
CI01180000_11111159_11112550.mRNA mRNA downstream 229066 11110801 ~ 11112550 (-) True CI01180000_11111159_11112550
CI01180000_11106711_11107109.mRNA mRNA downstream 233722 11106466 ~ 11107894 (-) True CI01180000_11106711_11107109
CI01180000_11098239_11100667.mRNA mRNA downstream 240949 11097736 ~ 11100667 (-) True CI01180000_11098239_11100667
CI01180000_11091600_11093609.mRNA mRNA downstream 247926 11091322 ~ 11093690 (-) True CI01180000_11091600_11093609
TU806323 other downstream 1440228 9898424 ~ 9901388 (-) True G684929
TU805835 other downstream 2617749 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 3430408 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 3758813 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 3815962 7506890 ~ 7525654 (-) True G684071

Expression Profile