RNA id: TU807540


Basic Information

Item Value
RNA id TU807540
length 2505
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G686048
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 11415389 ~ 11418016 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTATGGTCATGCAAAAAAAATCCAGCATCCAATTAAACCTCAGAGTATAATCATATGTAGTCCCATCATATATGGTTACAATGCAAAAAACTGACAAGAATGGGGCAACATACCAAGCTAAAGCTTTGTTAATCTCTTTTAGTCAATTTCTTTACAAAATTAGCATTGGGAACCATATTTCAGAGCCACATTTCATTTACCTTGAAGATGCAGGTAATATACACATATTTCAATTTTAGGTAACACAGACAGTGAAAATCATTACAAGAAAGTTACACATGCATATTTTCCTTCTGCTGAACTGCATATATGGTTTGGTTGTGGGAGTTATTTAGTTCAGGAATTATTCACTTAGCATACAAAGGCGTTTGTACCCATCTAACAGTCATAAGAAATACAAGAACTATAATCTCCTGCATCTGGAAACACCTCTTAACCATTTATATTTTTTATGTAAGTTTAACAGACTAAACTGCACTTTTTTAAACAAGAACACTCTCATATCTGAGAGGACACACTATGAGTGAAGGAGGTGGCCAGAGACTGGCTGATCACACTGTTAGAAGACACACTGCAGCAGGGGGCAACAGAGAGCGCAGTATGAAGGTATGGCAGACATCACAGTGCCAGACGGTTTCATCTGTGGACAAGTAACAAGATGCCGTAGGGCAGGAGTACTCTCTTTCCTCCCTTTTTTCAACATATAGACTTGGGTGCAACATTTGCCCAACTTTAAAAGGTAATATGTCACAAGAAATGGCTTAGCACAGAGTAAAGGTGGGGGGGAACAGCAAGCCCCCTAGGCATCACAATTCACACACAGGATTTTACATAACACGGTCAAGAACAGTGTTCCGATGTATGACAGTCACAGGTAAACTTTAAAGGGAGAACAATGTGTCCATGTGCTTTAACACACCCAAACTGACATTTTTTTAACAAAGTTTGTTTACTGTGTGTACTGAAAGTCTGTGAGTGTACGTGCATCTGGATGAAGACGACTGGCTAAGCGTTCAAATCATCCCTCATCAATGATATGCATTAGTATTTACAGGTTATACTGGAAAAAATAAAATAAAACAAGATCCTAAACAAATCCAACATACCCAGAACAGATTCTGCCACAAGATGGACCCCAAAACACTGTTTTACCAAAACCACAATCAAGTCACTATGTATGATGATGAGACCACATAAACAGTGGCAGAACAAGTGTTCAGACACTCCTGGAAGGGTAATGTGACAGTTTGGGTCTTCTTCTAGAGTGTGGACCCCTATGGATGGATTTCATAACCTGAAGTTGCAAAGCAGTCCACAAAAAAAGTGAACAGAACAGCATAGAGTCTCAAGCTTATGTGCAAAACAGTACAGGCCATTTCAATTTTTCCTTTTTCGACATGCTTATAGTCTACAAAATGATATGCACAGCAGCTGGAAGCATAAAAGGGTGAGCCGAGTAACTGTGAGGGAGGGCGAGGGTTGCGAGCGTGTTTGTGTGTAGTGTTTAGCGCCCCCTGGGGACCAAGAGACGTACAACAAACTTGAATCAAAGGAAGTGAGAGTTCTGCAACTTCAGGTTCAGAGAGCCGGGAGGTTATGGGTGCAAACATACACGAAGGCAAGTAAACCAACCCAATTTGAGTTTAGGCCTCATGTGGAAGTGTGTGGAAAGAAGATCTACGCAAAACACTACATAGCAACAAGCATCTTGAACCCAAGAAAGAACATTTATACTTGCACTAACACACACACATCTCCCCACCTTTTTCCCCCGGACACCACAGACTGTTTTGTCCTTCCTCGTTATAAATATCTATTTATGCACAACTATATTAAATCCTGTCCCACTTTAAAACATTGTCTCGAAAACACAAAATACTTTCAAATACAGCATCATTCAAAAGATTAAAAATCAATAAATCCACAAAAACAAGACAGAAAGCCAGAAAAAAAAAAATCTTCTCAAAGTCTAAGAGTCTACACTTTGGTGCGTCGTTCCCTCTGATATGCCATGCCATCACATTCTTTGTGTAAAAAAAAGAATAACAAAACAGAAAAATGTTTTCTTAAACGTAATAAACTCACACCATTTACCCTTAAAATGGCGCGTTCTCTTCAAAAATTCACATTTCTGATTCTAACTTCCATCTCTACCAGCTGTTAATTACACATGTGAAGATCTCAATATTTTACAATATATTATTAATACTTTAAACACCATTTCCGAATGTTGGGCAGCAGAGATTATGGGATAATGGGTAAAGACAATACAGCGCCCCGTGTGGGCATTAGAAGCATGCAGCATCCAGAAGGCAGGGCTGCTGCCGTGGCCGCCCGCCCCACATCTAGCTAGAGTTGGACTGAAGTGGTGGCCACTTTTAAATATATTTCTTAGTTGTGTAAATTTTTTCCCTCACTTTTTCAAAACTTCAAGAGGTTCTCTTCTGGCCGGGCTCCAGGCGGCAAGACGTGCACGGAGAAGAAATGCTCCAATCAGCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU807617 lncRNA downstream 67786 11347200 ~ 11347603 (-) True G686124
TU807616 lncRNA downstream 68774 11346389 ~ 11346615 (-) True G686123
TU807614 lncRNA downstream 70224 11344844 ~ 11345165 (-) True G686121
TU807613 lncRNA downstream 70676 11344249 ~ 11344713 (-) True G686120
TU807542 lncRNA downstream 80171 11334261 ~ 11335218 (-) True G686050
TU807642 lncRNA upstream 722 11418738 ~ 11418952 (-) True G686149
TU807643 lncRNA upstream 1865 11419881 ~ 11420230 (-) True G686150
TU807650 lncRNA upstream 14853 11432869 ~ 11441416 (-) False G686153
TU807652 lncRNA upstream 14853 11432869 ~ 11438783 (-) False G686153
TU807653 lncRNA upstream 14853 11432869 ~ 11440289 (-) True G686153
CI01180000_11127163_11138849.mRNA mRNA downstream 276540 11126317 ~ 11138849 (-) True CI01180000_11127163_11138849
CI01180000_11111159_11112550.mRNA mRNA downstream 302839 11110801 ~ 11112550 (-) True CI01180000_11111159_11112550
CI01180000_11106711_11107109.mRNA mRNA downstream 307495 11106466 ~ 11107894 (-) True CI01180000_11106711_11107109
CI01180000_11098239_11100667.mRNA mRNA downstream 314722 11097736 ~ 11100667 (-) True CI01180000_11098239_11100667
CI01180000_11091600_11093609.mRNA mRNA downstream 321699 11091322 ~ 11093690 (-) True CI01180000_11091600_11093609
TU807544 other downstream 71893 11341616 ~ 11343496 (-) True G686052
TU806323 other downstream 1514001 9898424 ~ 9901388 (-) True G684929
TU805835 other downstream 2691522 8722693 ~ 8723867 (-) True G684493
TU805466 other downstream 3504181 7910761 ~ 7911208 (-) False G684182
TU805357 other downstream 3832586 7579404 ~ 7582803 (-) True G684080

Expression Profile