G686153


Basic Information

Item Value
gene id G686153
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 11432869 ~ 11441416 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU807650
CAGTTAATCATTTATTAATGTAGTAGTGTGGATACAGCAGTTTGGAGTTTTTATTTTATCACCTTTTTTTTTTTTTATAATTTGCATAAATGTTTGTGATGACATGGATTTGATTAGTATATTAATGTGCTAACATTTCATTTTACTTGTTATAATAGTAATTTACTATATAGCAAGAACAACAATACTCTGAAAGGTGTTTCCCAACATAATTATAATCACAATTACATGATTTTCTTGACTATAATTAGTACTTATGTAAATGAGTTATAATTATAATGAATGGTAAAGTGTGACAATATGTTATTTAAAGGGCAGTTCCAGATTATGCAGTCAAAACTGTTTACCTTTATCTAAGTGACAGGAAAAACAGCAGTGTGTGCCAAGCAGTCCATCACTGCCTGTGCTAACTGGACATTGTTGCCCAAAGCACGTTATTCTCATTTGTTCACTTCTAAAATGCAACATGCTGACAAAATATCAAGCGAATCAAAACTTCATTCTCCACCTGACACCTTCATTTAAGTTTATATGCTTCCTGCATAAAATTCCTCCACAAATGCATACATATTTCTTTGTTTAAAGCTCACATTCAGATGCAGATTTAGAATCAAAGTTAAAAGTACATTACATATACATTTTATATGTCCTCCTGATGGATCTACAGTTTGTTGCATTGTGACTATGTGCTTACTGCATAGGTGTGTTTTTGGTTATAGTGCAGGGAAATTAGGACAGGCATAAATTAGGTTTGTTTAGGGTTGTAGATTCACAGGTCATCAGTCTCCCCATCAAATGGTATAGTATCCAACTCCATGTGAATGCTGCCTGGTTCACCGCTACCCACCCAGCCAATGGGTGTGCGGTTAAAGGAGGGTCGCGAGCCGATATCATGTTGGTACACCACTGCTGGTTCAGGCTCATCAACAGCCACCTCGATGTCTGGCAGCTGGAAGGTCATCAGCTGAGACGCCTTCTCAAAGCCTCCATAGGGCATAGCACTCCTGTTAAAGCTCTTATATTTGCGCAGCTCCTTATAAGAATAGGGTCCTGGCATTTGAGTCTTCATTGTGGCTAGAAGGTCTTCATTGCCTTTCATAGCCCGTTCCCAAGGTGAAACATATGTCTTCCCATATGCGTCTCTCTTTTTAGCCTTTTCCAAAGCACTTTCTGCGCTCTGTGAGGCATCTCCTGACACACCAGCATTCCCTCCTGCTCCTCCTGCCACTCCGGCACCTCCAGCACCTCCAACTCCTCCAACTCCTCCAGCTCCTCCAGCGAGCCCACCTGCTAGCAGCCCACCCCCTGCTCCCTTGCCATAGCTTCCGGGTTTGGGAGGAGGCACTGGTGCTTGGCCGGCCCCACCAACCTGACCAGCCATCTGTCCACCAATCAGACGGCCACCAACATCCATCATCTGGCCCCCCAGGCTGGGCACGAACTTCTGGAGGTTATCCTTGACTCACTACTGAAGAGATCTGGGTTGTTCTCATAGATGAACTTCTCCACACGAATCTGTCTCATCCTGAACATCTTGGAGCCTTTGTTCTTTTGAAGGGATAGTTCCTCCAGCATGATGTCCTTGGGTGCCCTGATTTTTTTCCCCAAGTCAAACTCTGAGGCCTCGGGCTCTGATTCATACTCATCTTGGGTTATGTGTGACAGGTCAGTGATGATCTTGGAAAGCTTTTTCCTCTTGTTGGGTGGGGCTGGTGTTCCTGACAGAGGCATGATTCCAGACAAGGCTCTAGACTGCTTACAAGACGTGGTCTCAAAGGTACAGTGAAAATAGGAAAAGGCTTGTGGCTAAGAAGTTTACCAATTCCCGGGTACCTTTGACCTGTGGCTGGACCAAGAACCCAAGGCGTGCAAAATCCAGTTGGGACTTGGATGGCAGATCTTCATCGGGGGGAGGGAGAGTCCGGGTAAAAAGGGGGAGTGAGGAGTAAGGGGG
>TU807652
CTCGGCAACATTGCTCAAAAAGTTGCCCTGTGTATCATCACCTTTAGTCTGCCTTACCATGGACTCACTACTGAAGAGATCTGGGTTGTTCTCATAGATGAACTTCTCCACACGAATCTGTCTCATCCTGAACATCTTGGAGCCTTTGTTCTTTTGAAGGGATAGTTCCTCCAGCATGATGTCCTTGGGTGCCCTGATTTTTTTCCCCAAGTCAAACTCTGAGGCCTCGGGCTCTGATTCATACTCATCTTGGGTTATGTGTGACAGGTCAGTGATGATCTTGGAAAGCTTTTTCCTCTTGTTGGGTGGGGCTGGTGTTCCTGACAGAGGCATGATTCCAGACAAGGCTCTAGACTGCTTACAAGACGTGGTCTCAAAGGTACAGTGAAAATAGGAAAAGGCTTGTGGCTAAGAAGTTTACCAATTCCCGGGTACCTTTGACCTGTGGCTGGACCAAGAACCCAAGGCGTGCAAAATCCAGTTGGGACTTGGATGGCAGATCTTCATCGGGGGGAGGGAGAGTCCGGGTAAAAAGGGGGAGTGAGGAGTAAGGGGG
>TU807653
ACCTGTTAAAGCTCTTATATTTGCGCAGCTCCTTATAAGAATAGGGTCCTGGCATTTGAGTCTTCATTGTGGCTAGAAGGTCTTCATTGCCTTTCATAGCCCGTTCCCAAGGTGAAACATATGTCTTCCCATATGCGTCTCTCTTTTTAGCCTTTTCCAAAGCACCTCCTGCTCCTCCTGCCACTCCGGCACCTCCAGCACCTCCAACTCCTCCAACTCCTCCAGCTCCTCCAGCGAGCCCACCTGCTAGCAGCCCACCCCCTGCTCCCTTGCCATAGCTTCCGGGTTTGGGAGGAGGCACTGGTGCTTGGCCGGCCCCACCAACCTGACCAGCCATCTGTCCACCAATCAGACGGCCACCAACATCCATCATCTGGCCCCCCAGGCTGGGCACGAACTTCTGGAGGTTATCCATGGACTCACTACTGAAGAGATCTGGGTTGTTCTCATAGATGAACTTCTCCACACGAATCTGTCTCATCCTGAACATCTTGGAGCCTTTGTTCTTTTGAAGGGATAGTTCCTCCAGCATGATGTCCTTGGGTGCCCTGATTTTTTTCCCCAAGTCAAACTCTGAGGCCTCGGGCTCTGATTCATACTCATCTTGGGTTATGTGTGACAGGTCAGTGATGATCTTGGAAAGCTTTTTCCTCTTGTTGGGTGGGGCTGGTGTTCCTGACAGAGGCATGATTCCAGACAAGGCTCTAGACTGCTTACAAGACGTGGTCTCAAAGGTACAGTGAAAATAGGAAAAGGCTTGTGGCTAAGAAGTTTACCAATTCCCGGGTACCTTTGACCTGTGGCTGGACCAAGAACCCAAGGCGTGCAAAATCCAGTTGGGACTTGGATGGCAGATCTTCATCGGGGGGAGGGAGAGTCCGGGTAAAAAGGGGGAGTGAGGAGTAAGGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU807650 False 1954 lncRNA 0.44 6 11432869 11441416
TU807652 False 556 lncRNA 0.49 3 11432869 11438783
TU807653 True 911 lncRNA 0.52 5 11432869 11440289

Neighbor

gene id symbol gene type direction distance location
CI01180000_11127163_11138849 NA coding downstream 294020 11126317 ~ 11138849 (-)
CI01180000_11111159_11112550 NA coding downstream 320319 11110801 ~ 11112550 (-)
CI01180000_11106711_11107109 SPRN coding downstream 324975 11106466 ~ 11107894 (-)
CI01180000_11098239_11100667 ELOVL6L coding downstream 332202 11097736 ~ 11100667 (-)
CI01180000_11091600_11093609 NA coding downstream 339179 11091322 ~ 11093690 (-)
G686150 NA non-coding downstream 12639 11419881 ~ 11420230 (-)
G686149 NA non-coding downstream 13917 11418738 ~ 11418952 (-)
G686048 NA non-coding downstream 14853 11415389 ~ 11418016 (-)
G686124 NA non-coding downstream 85266 11347200 ~ 11347603 (-)
G686123 NA non-coding downstream 86254 11346389 ~ 11346615 (-)
G686176 NA non-coding upstream 33010 11474426 ~ 11476027 (-)
G686181 NA non-coding upstream 43765 11485181 ~ 11490006 (-)
G686052 NA other downstream 89373 11341616 ~ 11343496 (-)
G684929 NA other downstream 1531481 9895316 ~ 9901388 (-)
G684493 NA other downstream 2709002 8722693 ~ 8723867 (-)
G684182 NA other downstream 3521661 7910761 ~ 7911208 (-)
G684080 NA other downstream 3850066 7579404 ~ 7582803 (-)

Expression


Co-expression Network