CI01180000_09712937_09715071 (SIX2A, SIX2)


Basic Information

Item Value
gene id CI01180000_09712937_09715071
gene name SIX2A, SIX2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 9712381 ~ 9715548 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_09712937_09715071.mRNA
AGGAGCCACCTCAAAGCATATCAGGTTACCTTGAATGACAGCGTAACCATGGCAAATAATTTGACTAAAACTATTGTCTTATCCTCATCATCCCCGGGTCAGATAACCAACCAATCACCGTTCACATAATCGCTTTTCTTGCCAGCTTAGAATAATATTATTAAAACAAGAGAGCGAGGTCCTTCTTCGCGAGTGCGTTATGCTGAAACGACATAGAAGAGGTGGCGAGAGACTCGCGCAGGAGGAACAACTTTCTCTCGTGTGCTTTAGATGGATATACGGTGTATTATGCTTGCTTGAACGGATCTAAAGTTTTGTGCCTCTCTAAGCCAGGAGTGGGATTTGATTTCGTCTACTCAAGAAGTCGTCCTAAATTTTTGCCCCCAAGGGTTTACTTTAAGTTTGTTGAAGAACTGTCGCTGTCATCGGTAAAATAGACATACGTACAAAAAGTGGACGTTTATTCGTGACAAACCATGTCTATGCTTCCAACATTCGGCTTTACGCAAGAGCAAGTGGCGTGCGTCTGCGAGGTCCTTCAGCAGGGTGGAAACATTGAACGTCTCGGACGCTTTTTGTGGTCTCTGCCGGCTTGCGAACATCTCCACAAGAACGAGAGTGTGCTCAAAGCAAAAGCTGTGGTCGCTTTTCATAGGGGAAATTTCAGAGAGCTTTATAAGATTCTCGAGAGCCACCAGTTCTCTCCGCACAACCATCCGAAGCTGCAGCAGCTGTGGCTCAAAGCGCATTATATCGAGGCTGAGAAGCTCCGGGGCCGCCCTCTTGGGGCTGTTGGGAAATACCGCGTCCGAAGAAAGTTTCCGCTACCCCGCTCCATTTGGGACGGCGAGGAGACAAGTTACTGCTTTAAAGAAAAGAGCAGGAGCGTGCTGCGGGAATGGTACACCCATAACCCATACCCTTCCCCGCGGGAGAAGAGGGAACTAGCAGAGGCAACGGGGCTAACAACAACACAAGTCAGTAACTGGTTTAAAAACAGACGTCAACGCGACCGAGCAGCGGAAGCTAAAGAAAGGGAGAATAATGAGAACTCGAACACAAACAGTCACAACCCATTAACGTCTTCCATGAATGGAAATAAGACTATTTTAGGAAGCTCGGACGACGACAAAACGCCGTCTGGTACCCCAGATCACACCTCGTCAAGCCCGGCCTTGCTCCTCACGTCAAACTCCGGACTTCAGTCCCTACACGGCCTCGCACCTCCACCTGGTCCCAGCGCCATCCCAGTGCCTAGTGCTGATTCCGTGCATCACCACCATTCATTACACGACACTATACTGAACCCTATGTCATCAAACTTGGTCGACCTTGGCTCTTAAACATGTGGACCCTTTCAGAAGGACGCTTGTACGTGAACGTTTAGCGTAAACATCTCCTGACACGTATAAAACAAAAACAAATGAGGCAAGGAATGGACTAAGAGAGTTGTGGATGTTTGTCGGCTGACCTACTTGCAAAGCTGATATGGAGGGCCTTGATAGAGGTATTTTTCTAGAATGTAATGCCATGATCTATTGTTAATAAAC
>TU806291
AGCAAGTGGCGTGCGTCTGCGAGGTCCTTCAGCAGGGTGGAAACATTGAACGTCTCGGACGCTTTTTGTGGTCTCTGCCGGCTTGCGAACATCTCCACAAGAACGAGAGTGTGCTCAAAGCAAAAGCTGTGGTCGCTTTTCATAGGGGAAATTTCAGAGAGCTTTATAAGATTCTCGAGAGCCACCAGTTCTCTCCGCACAACCATCCGAAGCTGCAGCAGCTGTGGCTCAAAGCGCATTATATCGAGGCTGAGAAGCTCCGGGGCCGCCCTCTTGGGGCTGTTGGGAAATACCGCGTCCGAAGAAAGTTTCCGCTACCCCGCTCCATTTGGGACGGCGAGGAGACAAGTTACTGCTTTAAAGAAAAGAGCAGGAGCGTGCTGCGGGAATGGTACACCCATAACCCATACCCTTCCCCGCGGGAGAAGAGGGAACTAGCAGAGGCAACGGGGCTAACAACAACACAAGTCAGTAACTGGTTTAAAAACAGACGTCAACGCGACCGAGCAGCGGAAGCTAAAGAAAGGGAGAATAATGAGAACTCGAACACAAACAGTCACAACCCATTAACGTCTTCCATGAATGGAAATAAGACTATTTTAGGAAGCTCGGACGACGACAAAACGCCGTCTGGTACCCCAGATCACACCTCGTCAAGCCCGGCCTTGCTCCTCACGTCAAACTCCGGACTTCAGTCCCTACACGGCCTCGCACCTCCACCTGGTCCCAGCGCCATCCCAGTGCCTAGTGCTGATTCCGTGCATCACCACCATTCATTACACGACACTATACTGAACCCTATGTCATCAAACTTGGTCGACCTTGGCTCTTAAACATGTGGACCCTTTCAGAAGGACGCTTGTACGTGAACGTTTAGCGTAAACATCTCCTGACACGTATAAAACAAAAACAAATGAGGCAAGGAATGGACTAAGAGAGTTGTGGATGTTTGTCGGCTGACCTACTTGCAAAGCTGATATGGAGGGCCTTGATAGAGGTATTTTTCTAGAATGTAATGCCATGATCTATTGTTAATAAACATGCTAAAAACGTCTTAATTGTTGATATCAACATTATTTGATATCGTTATTATTTTAGATTGCAAATTGACCCAGGAATTCTCAGTCGCATATTCCGTTTGTTTACATTTATCTTTTTTTTTTTTTTTTTAAAAAGGCCATACATTGTTTCATTTTAATGGGATTTCGTTTAATGCAATGCTTTAATACCAACACAGCATTTCAAACGACTATGGGGCATCTCTTCATTTTCATTTGTATTTTACTTTTGGAAAGCGACTGCATGTAACCTTTGGGATCAATAAAAATAAACTCCAAACTCATCATAGTTTCATTCATATACACTTAACAATAAAATAAGATGCATTTAC

Function

symbol description
six2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pronephros development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in head mesenchyme; immature eye; intermediate mesoderm; and nervous system. Orthologous to human SIX2 (SIX homeobox 2).
six2 Enables sequence-specific double-stranded DNA binding activity. Involved in cell migration; cell population proliferation; and kidney development. Predicted to be part of chromatin and transcription regulator complex. Predicted to be active in nucleus.

GO:

id name namespace
GO:0090189 regulation of branching involved in ureteric bud morphogenesis biological_process

KEGG:

id description
K19472 SIX2; homeobox protein SIX2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_09712937_09715071.mRNA False 1550 mRNA 0.48 2 9712731 9715548
TU806291 True 1390 lncRNA 0.45 2 9712381 9715038

Neighbor

gene id symbol gene type direction distance location
CI01180000_09568657_09570949 NA coding downstream 141603 9567425 ~ 9571128 (-)
CI01180000_09515348_09519388 PREPL coding downstream 193343 9514397 ~ 9519388 (-)
CI01180000_09389794_09446057 NA coding downstream 266674 9389794 ~ 9446057 (-)
CI01180000_09367707_09378410 ABCG5 coding downstream 334268 9367595 ~ 9378463 (-)
CI01180000_09361267_09366764 NA coding downstream 345967 9360894 ~ 9366764 (-)
CI01180000_09797406_09801305 NA coding upstream 81545 9797093 ~ 9801321 (-)
CI01180000_09862542_09863408 NA coding upstream 146588 9862136 ~ 9863760 (-)
CI01180000_09880982_09883947 PRDX3 coding upstream 165262 9880810 ~ 9884190 (-)
CI01180000_09889952_09893572 FAM45A coding upstream 173894 9889442 ~ 9893572 (-)
CI01180000_10043847_10061741 RAB11FIP2 coding upstream 328253 10043801 ~ 10062468 (-)
G684905 NA non-coding downstream 14951 9694434 ~ 9697780 (-)
G684911 NA non-coding downstream 21965 9688413 ~ 9690766 (-)
G684912 NA non-coding downstream 25072 9686051 ~ 9687659 (-)
G684752 NA non-coding downstream 61534 9650856 ~ 9651197 (-)
G684751 NA non-coding downstream 62587 9649927 ~ 9650144 (-)
G684946 NA non-coding upstream 25001 9740549 ~ 9740773 (-)
G684956 NA non-coding upstream 35023 9750571 ~ 9750796 (-)
G684959 NA non-coding upstream 37201 9752749 ~ 9754227 (-)
G684961 NA non-coding upstream 49663 9765211 ~ 9765593 (-)
G684967 NA non-coding upstream 67212 9782760 ~ 9782959 (-)
G684493 NA other downstream 988864 8722693 ~ 8723867 (-)
G684182 NA other downstream 1801523 7910761 ~ 7911208 (-)
G684080 NA other downstream 2129928 7579404 ~ 7582803 (-)
G684071 NA other downstream 2187077 7506890 ~ 7525654 (-)
G684018 NA other downstream 2299599 7403147 ~ 7413132 (-)
G684929 NA other upstream 182876 9895316 ~ 9901388 (-)
G686052 NA other upstream 1626068 11341616 ~ 11343496 (-)

Expression


Co-expression Network