G684905


Basic Information

Item Value
gene id G684905
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 9694434 ~ 9697780 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU806294
ACGTATACATTAACAGAAGCACGCAAGAAAGTAACATTGAGTTATAAGCGCTGGACTGGAAACATGAAATAGACTTGGTCAGTCGATGATGATATCCAGTATTTTGTCTTTTGCATTATTCTCGACTGATAATTCATGGTCACTAAAGAGTTCTTTTCATGGCATAAAACAGAGAAACAAAACGCCTAGAGCACTTAATAGTTACGTTTTGACGAATAGTTTATGTAGGGACACCAAGCCAAGAAAAGTGAACAGGGATAGAAAAGAGAATGGGTATAGCAATATTATTTACAGACTTATTTCTACACATATATTACAGACTGGGAGAATGATCGCATTATTTAAGATATACATAATTCAATATAAAATCTCGAAATAAAAATAAAAATCTGATACAGTCATAACGATTCAGTTCCACATTTGACCAGTACCCCACATAGGCAGTGACAGAAAGTGTAGTAAAAAGGTGCTTACGACTCAAATGATTGTCTGATGAACATAAAGGAAAAGAGGATTGCATCCTGGCTGCTCGTCGTCACTCGGACTAAAACAGAAAAAAAGGCGATGGACACCGGTTTCTGGTAATTCCCTCTTCACGGTGGTCCTGGTAGACATAATAAACGTGGGGCATTTCCCCATATACAAAAAAATGAAAGAAAAAAAATATATATTTAGTTATATATATATCATGCAAGTGATGGGGTGGGGGAAAGGTGTGGGGTCCATTGAAAGCGCTTGAAAAACACGTGCTTTTATGTTTTTTTTTCTTTTTTTTTTTCCTTTTTATAATAGTAATATCAATTGGTCCTTTTTCATATTCCCCGATAATTAATAAAGTTTATTCAGGTCCATTTTCCTGTATATATTTCTCTGTTTGCGTATCATACGTCGCATTCCGAGTCACTTGATGTTACTGAAAGAATCGACGTGCCCGTGTCGACTCGCTCTGTCATACTCGAAACACTGGTCGTTGGACTAGCTGCAGTTGATGGCGACTCCGCCGAACTGCGTGGAGTGCAGCCGGATTCTGAAAGGGACCGCATGCCATTCTGCCCTATTGCTTGATGCTGGAGCCTGTTTTTTGCTGCCGCTGCCCTGTCTCGTTGTCTCCGGTTTTTAAACCAATTTCCGACCTGTGTAGGAGTGAGTCCAGTGGCTTGAGCCAGTTCCCTTTTCTTGCTGGGATTTGGGTAGGGGTCCTGAAGGTACCACTCCCGCAACAGACTCCGCGTTCGCTCTTTGAAACAATGCGTCTTCTGCTCACCGTCCCAGATGGTTCTAGGCAGGGGAAACTTCTTTCGCACCCTGTACTTATCAACCGGTCCTAGGGGACGCCCGCGTAGTTTCTCGGCCTCCTGATAGTGAGCCTCTAGCCACATCGCTTGTAATTTACCATGCGAGTCCTTGGTAAACTTGTGGTTCTCCAAAATGTGGTAGAGATCGCGAAAATTGCCTGTGTGGAAGGCAACCACAGCCCGGGCACGAAGGATGGATTCATGCTTGTTGATCGCCTCGCAAGCACCCGGCGCCACTGGAAGCGACCATAGGAAGCGACCCAGCCGCTCGATGTCCCCGGTCTCCTCCAGCGTCTCGCAGACGCTCGCCACTTGCTCTGGAGAGAAGTTTAGGGTCGGTAGCTGAAACATTGACAAGTCTTCGGGAGACCTGGTGCTGGGCGCACTGCTCGCCAAGAGCAAAGGGCGATCAGCAAAGTTTGGCAGGAAGAAATGAGAGGGATAAAGCTCTAAAGGCGATCTGAAAACCATGGAAATGACCTGAGAGAGAATGAAATTTGCCAAGGAAAAAAGAACGACGAATTCGGATTGAATGATTCAATAGCTATCGCCTAATGACACCAGCCTCATAATATCTCCCCCT

Function

NR:

description
hypothetical protein Z043_106433, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU806294 True 1878 lncRNA 0.44 2 9694434 9697780

Neighbor

gene id symbol gene type direction distance location
CI01180000_09568657_09570949 NA coding downstream 123306 9567425 ~ 9571128 (-)
CI01180000_09515348_09519388 PREPL coding downstream 175046 9514397 ~ 9519388 (-)
CI01180000_09389794_09446057 NA coding downstream 248377 9389794 ~ 9446057 (-)
CI01180000_09367707_09378410 ABCG5 coding downstream 315971 9367595 ~ 9378463 (-)
CI01180000_09361267_09366764 NA coding downstream 327670 9360894 ~ 9366764 (-)
CI01180000_09712937_09715071 SIX2A, SIX2 coding upstream 14951 9712381 ~ 9715548 (-)
CI01180000_09797406_09801305 NA coding upstream 99313 9797093 ~ 9801321 (-)
CI01180000_09862542_09863408 NA coding upstream 164356 9862136 ~ 9863760 (-)
CI01180000_09880982_09883947 PRDX3 coding upstream 183030 9880810 ~ 9884190 (-)
CI01180000_09889952_09893572 FAM45A coding upstream 191662 9889442 ~ 9893572 (-)
G684911 NA non-coding downstream 3668 9688413 ~ 9690766 (-)
G684912 NA non-coding downstream 6775 9686051 ~ 9687659 (-)
G684752 NA non-coding downstream 43237 9650856 ~ 9651197 (-)
G684751 NA non-coding downstream 44290 9649927 ~ 9650144 (-)
G684746 NA non-coding downstream 53555 9640658 ~ 9640879 (-)
G684946 NA non-coding upstream 42769 9740549 ~ 9740773 (-)
G684956 NA non-coding upstream 52791 9750571 ~ 9750796 (-)
G684959 NA non-coding upstream 54969 9752749 ~ 9754227 (-)
G684961 NA non-coding upstream 67431 9765211 ~ 9765593 (-)
G684493 NA other downstream 970567 8722693 ~ 8723867 (-)
G684182 NA other downstream 1783226 7910761 ~ 7911208 (-)
G684080 NA other downstream 2111631 7579404 ~ 7582803 (-)
G684071 NA other downstream 2168780 7506890 ~ 7525654 (-)
G684018 NA other downstream 2281302 7403147 ~ 7413132 (-)
G684929 NA other upstream 200644 9895316 ~ 9901388 (-)
G686052 NA other upstream 1643836 11341616 ~ 11343496 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006470 six3a coding NC_007124.7 CM002897.2 10258007 ~ 10261383 (-)
bowfin (Amia calva) AMCG00001877 six3a,six3,LOC107733790,LOC107585256,LOC107602501 coding CM030143.1 CM030143.1 18536853 ~ 18539797 (+)