CI01180000_09797406_09801305


Basic Information

Item Value
gene id CI01180000_09797406_09801305
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 9797093 ~ 9801321 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_09797406_09801305.mRNA
GTTCATGATCACATTATGAAAATATTGGCTCATCCTGAGCCAGAGATTATGGGCTGTGCCAAGTTCTTGTCTCAAATAGGGGGCAGTTTGGATCAGATGGGTACTGCTGTTCTCAGGCAGAGTGTTGAGAGCAGTGTTAAGAGCAGTGGTCTGGATGACTTGGCCAAATTTCTGGACACCACACCTGAGACTCTACAGCTCATTGTGGATGGACTCATTCAGCCGCCTGGCTTTGACATTCGTCAGGGTTTTGAGCAGGCAGACTTCAAGCGAGAAATTGTATCCATGAATGACCTGCACGATGGCATGGTGCTGACGGGCCGTGTAACAAACACTGCTTTATTTGGAGCCTTTGTGGACATTGGAGTCGGCCGTTCTGGTCTCATCCCAAAGCGTTTCATCAGACCGGATAAACTTCCTGTGGACCAGAGGCGAAGAAGCCTAGCTCTTGGCCCAGGTGAGCGGGTAGAGGTACGAGTCATGAATGTGGATCTTCAGAGGAATCGGATCAGTCTGGACCTCATTAGGGTTCTTAGATAGGAACTATAATTGAGGATTTACTGTAGTCAAGTGTAGTTAACTGTTTTCATGTAGAATAATGTATTTGTTTATGGAAAAGGAAGATTTTGCCATGTTTGACTGTGCTGAATGTGCTGAAAGAGAAAATGTCTTAGAAAATGTTTTTATTTGCACTTTAGCAAGTTTCTTACTAATCTGTCCATAAATAGTAATATTAGATTGTTTTTTCATGTCTTGTGACAAAAAAAAAAAGGTTCTATCTTTTGTGCTTGTAAAAAAGATGTTTTTTTGTTTTACCTTTGCTGTTACTGTAGTTTTCAAAACATTCAATAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_09797406_09801305.mRNA True 854 mRNA 0.41 3 9797093 9801321

Neighbor

gene id symbol gene type direction distance location
CI01180000_09712937_09715071 SIX2A, SIX2 coding downstream 81545 9712381 ~ 9715548 (-)
CI01180000_09568657_09570949 NA coding downstream 225965 9567425 ~ 9571128 (-)
CI01180000_09515348_09519388 PREPL coding downstream 277705 9514397 ~ 9519388 (-)
CI01180000_09389794_09446057 NA coding downstream 351036 9389794 ~ 9446057 (-)
CI01180000_09367707_09378410 ABCG5 coding downstream 418630 9367595 ~ 9378463 (-)
CI01180000_09862542_09863408 NA coding upstream 60815 9862136 ~ 9863760 (-)
CI01180000_09880982_09883947 PRDX3 coding upstream 79489 9880810 ~ 9884190 (-)
CI01180000_09889952_09893572 FAM45A coding upstream 88121 9889442 ~ 9893572 (-)
CI01180000_10043847_10061741 RAB11FIP2 coding upstream 242480 10043801 ~ 10062468 (-)
CI01180000_10128340_10143434 NA coding upstream 326659 10127980 ~ 10143930 (-)
G684967 NA non-coding downstream 14134 9782760 ~ 9782959 (-)
G684961 NA non-coding downstream 31500 9765211 ~ 9765593 (-)
G684959 NA non-coding downstream 42866 9752749 ~ 9754227 (-)
G684956 NA non-coding downstream 46297 9750571 ~ 9750796 (-)
G684946 NA non-coding downstream 56320 9740549 ~ 9740773 (-)
G684936 NA non-coding upstream 56227 9857548 ~ 9859444 (-)
G684994 NA non-coding upstream 82960 9884281 ~ 9884485 (-)
G684929 NA non-coding upstream 93995 9895316 ~ 9901388 (-)
G685008 NA non-coding upstream 144684 9946005 ~ 9946235 (-)
G684493 NA other downstream 1073226 8722693 ~ 8723867 (-)
G684182 NA other downstream 1885885 7910761 ~ 7911208 (-)
G684080 NA other downstream 2214290 7579404 ~ 7582803 (-)
G684071 NA other downstream 2271439 7506890 ~ 7525654 (-)
G684018 NA other downstream 2383961 7403147 ~ 7413132 (-)
G686052 NA other upstream 1540295 11341616 ~ 11343496 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005819 srbd1 coding NC_007124.7 CM002897.2 10023256 ~ 10029503 (+)