Gene
RNA
| Item | Value |
|---|---|
| gene id | G683885 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 6974469 ~ 6974681 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU805142 | True | 213 | lncRNA | 0.35 | 1 | 6974469 | 6974681 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01180000_06956161_06961385 | NA | coding | downstream | 13084 | 6956161 ~ 6961385 (-) |
| CI01180000_06936274_06938957 | NA | coding | downstream | 35512 | 6936263 ~ 6938957 (-) |
| CI01180000_06893062_06910960 | EXOC3L4 | coding | downstream | 63509 | 6892696 ~ 6910960 (-) |
| CI01180000_06854398_06859861 | NA | coding | downstream | 114608 | 6854296 ~ 6859861 (-) |
| CI01180000_06801398_06808587 | EIF5 | coding | downstream | 165682 | 6801090 ~ 6808787 (-) |
| CI01180000_06984285_06989850 | AIFM2 | coding | upstream | 8812 | 6983493 ~ 6990671 (-) |
| CI01180000_07045235_07052218 | PITX3, PITX3.S, PITX1 | coding | upstream | 69784 | 7044465 ~ 7052320 (-) |
| CI01180000_07146950_07151404 | H2AFY2 | coding | upstream | 171770 | 7146451 ~ 7153095 (-) |
| CI01180000_07244068_07250348 | NA | coding | upstream | 269338 | 7244019 ~ 7250909 (-) |
| CI01180000_07365562_07368471 | NA | coding | upstream | 390769 | 7365450 ~ 7368471 (-) |
| G683838 | NA | non-coding | downstream | 56652 | 6915701 ~ 6917817 (-) |
| G683868 | NA | non-coding | downstream | 61094 | 6912988 ~ 6913375 (-) |
| G683862 | NA | non-coding | downstream | 100823 | 6873373 ~ 6873646 (-) |
| G683859 | NA | non-coding | downstream | 106291 | 6867977 ~ 6868178 (-) |
| G683843 | NA | non-coding | downstream | 124887 | 6824079 ~ 6849582 (-) |
| G683886 | NA | non-coding | upstream | 1704 | 6976385 ~ 6976610 (-) |
| G683890 | NA | non-coding | upstream | 8089 | 6982770 ~ 6983037 (-) |
| G683893 | NA | non-coding | upstream | 20149 | 6994830 ~ 6996793 (-) |
| G683963 | NA | non-coding | upstream | 197353 | 7172034 ~ 7172249 (-) |
| G683979 | NA | non-coding | upstream | 219573 | 7194254 ~ 7194483 (-) |
| G683673 | NA | other | downstream | 211625 | 6762075 ~ 6762844 (-) |
| G683294 | NA | other | downstream | 1218943 | 5751044 ~ 5755526 (-) |
| G683394 | NA | other | downstream | 1355198 | 5618207 ~ 5619271 (-) |
| CI01180000_04796238_04797552 | NA | other | downstream | 2176627 | 4796176 ~ 4797842 (-) |
| CI01180000_03242704_03242928 | YPEL5 | other | downstream | 3729512 | 3241341 ~ 3242929 (-) |
| G684018 | NA | other | upstream | 428466 | 7403147 ~ 7413132 (-) |
| G684071 | NA | other | upstream | 532209 | 7506890 ~ 7525654 (-) |
| G684080 | NA | other | upstream | 604723 | 7579404 ~ 7582803 (-) |
| G684182 | NA | other | upstream | 936080 | 7910761 ~ 7911208 (-) |
| G684493 | NA | other | upstream | 1748012 | 8722693 ~ 8723867 (-) |
