AMCG00002858 (btaf1,LOC107679172,LOC106604898)


Basic Information

Item Value
gene id AMCG00002858
gene name btaf1,LOC107679172,LOC106604898
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4775371 ~ 4796304 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002858
GGAGGAAGGAATAAATGCAAGATGGCTCCTCATATAAAACCAGCCTCCTGGGTTCTCTCAAGTGAACAACAAAAATACCCTTTATTTCTAATTCGGATGAAATATCTTTCCGCACGCAGTTCGGGGGGATAATCTGGGCTCTGGACCCGGTATGAGTGTGATGTGAGGCGGAGCTTTACGCACACGTTGTTCGGGGGGACAAAAAAGGGGCACCGATGAATTAAGGCTCCCTCTCCGGCGGTCTGGCTCTGGATGGTGGGAGACATAGCAGGGCCTCGGCACAGCCAGCGGATCTCTTGCGGTTATAAAAGCGAGGCTGTGGGACATACATGGTGTCTTGTTGGGGGTTGACGGGTCAAGCGAGATCGCAGGTTCGCCCTTAAATCACCAGCCATGGCCGTATCAAGACTTGACCGTCTGTTTATTTTGCTGGACACCGGCACCACCCCTGTCACGAGGAAAGCAGCCGCTCAGCAGCTGGGAGACGTGGTCAAACTCCATCCCCATGAGCTCAATAATCTGTTGTCTAAAGTTTTAACCTATTTACGAAGTCCTAACTGGGACACGCGCATTGCGGCGGGTCAGGCAGTGGAAGCCATTGTGAAGAATGTCCCCGAGTGGAGTCCAACCCCGAAGCCCAAGGAAGAGTCCGGCTCTGACATATCCATGGAGGATGCCTCGTCAGATCGCTTGAGTTTCTACAGGTTTGACATCTCTCGCCTGCTGAAACATGGGGCTTCCTTACTGGGTTCAGCAGGGGTCGAGTTtgaaatccaggaagacaaATCAGGTGAAGTCGACCCCAAGGAGAGACTGGCCCGTCAGAGGAAGCTGCTGCAGAAGAAGTTGGGTCTTGACATGGGTGCCGCCATTGGCATGGACACCGAAGAGCTCTTCAATGACGAAGACCTGGATTACACCCCTTCCTCGGGCGCGGCTGGGAGCAGACCTCCTGGGGGGAAATCCTCGGGATGTCTGGCCTCGGAGAATCACACCACTATGCAGGCGGCCGAATTAATCGACTCTGAGTTTAGGCCAGGAATGAGCAACCGCCAGAAGAACAAAGCCAAGAGGATGGCAAAGCTGGTCGCGAAGCAGAGATCCAGAGACGTTGATCCCAATGAGAAGAGTAATGACAGTTTTGATGGAGAGCCCGAGGAGAAACgcaggaaaacaacaaatgtgGTGATTGAGCAGCCAGCGACAGACACCAAAGTCCTAATAGATAATGTTCCTGATAATTCAGGCCTGTATGATGAGACGAATGAATGGCCATTGGAGAGCTTTTGTGATGAGCTTTGTAATGATCTTTTCAACCCATCGTGGGAGGTTCGTCACGGGGCAGGAACGGGTCTCAGGGAGATACTTAAATGGCACGGTACTGGAGGTGGAAAACTGGTCGACAGCACTGAAGAGGAGATGACACGGCAGCATCAGGAATGGTTAGAAGACCTCGTCATCCGACTGCTTTGCGTATTTGCGCTCGACCGATTCGGAGACTTTGTTTCGGATGAGGTTGTGGCACCAGTGCGGGAGACCTGCGCCCAGACTCTGGGGGTAGCCCTGAAGAACATGAGCGAAAACGGAGTGGAAAAAACCGTGGCTGTTCTGTTGAAATTGCTGGTAGAAGATCAGTGGGAAGTGAGACACGGGGGGCTTCTTGGGATAAAGTATGCCCTGGCTGTTCGACAGGATATGATTGGCACGTTGTTGCCCAAAGTGCTGCCGGCCATCACGGAGGGGCTGCAGGACCTGGACGATGACGTCCGAGCTGTCGCTGCCGCTGCTCTCATCCCGGTGGTGGACGGGCTGGTCCAGCTTCTGCCATCTAAGGTCCCCTTCATTGTTGACACCCTATGGGGCGCCCTGCTCGAGCTGGATGACCTCACAGCCTCCACCAACAGTATCATGACCCTGCTGTCATCCCTGCTGACCTACCCAGAGGTTCGCCAGTGCAGCATCCAGCAGTCGCTCACGGTGCTGGTGCCCCGTGTCTGGCCTTTCCTTCGCCACACTATATCATCCGTACGCAAGGCAGCCCTGGAAACCTTATTCACGCTCCTCTCAAAGGACGATCATAGCTGCGCTGTGTGGCTCACCCCAATACTTCAAGACATGCTGAGACACATCTTCCAGTCCTGCATCCTGGAGAGCAACCAGGAGATTTTGGACCTCATTCAGAAGGTGTGGACGGAGTTGATCCGCCAGGCCCCGCACCAGTATGTAGTTGCTGCTAGTTGCCCGTGGATGGGAGCCTGGCTGTGCTTGATGATGCAGCCGTCGCACATGCCCATCGACCTGAACATGCTGCTGGAAGTCAAAGCCAAGTGCAAGacttctgGGAAGCTCCGCCAAGGTCCGAATCCGGTGAAGGAGACGATCCAGGAATACATCGCCGGTGCTGACACGGTGACCGAGGAGCCCGCCACCAGGGACTACGTCGTCATGCGCGCCCGGATGATGGCGGCGAAGTTGCTCGGGGCTCTCTGCCGCTGCATTTGTGACCCCGGGGTGAACGCCACCAGTCAGGAGATCCGGCCGGCCGAGTCCCTGGCGCAGCTGCTCCTCTTCCACCTGAACTCTAAGTCCGCGCTGCAGAGGATCGCCGTGGCCTTGGTGCTGTGCGAGTGGGCGGCTCTGCAGAAGGACTGCGAGGTAGTCTCCAGCGCCGTGCAGCCGCGCCTGCTGGCCATCCTCTCCGAGCACCTGTACTACGACGAGATCGCCATCCCCTTCACCCGCATGCAGAACGAGTGCAAGCAGCTGATCACCCTGCTGGCCGAGGCGCAGATCGACGTGCGCAGCCGGGTGAACTGCAGCGTCTTCACCATTGATCAGGCTAACGAGCTGGTCACCACCATCTTCAACGACTCCACCGCCACCCTGAACCTCAAGTCCAAGCCCTGTCAGCCGCTGGACAGCAAGCGGCAGCAGGTCCAGATGACCGTGGCGGAGACCAACCAGGAGTGGCAGGTCCTGCACCTGCGCGTGCACATGTTCACCGCCTGCGCCGTGGCCAACCTGCGGCTGCTGCCCGACAAGCTGAACCCGGTGATCAAGCCCCTGATGGAGGCGGCCAAAAAGGAGGAGAACACCCTGGTGCAGAGCTACGCGGCCACCTTCATCGCCAAACTGCTCCAGCAGTGCACCCAGAGGAGCCCGTGCCCCAACCCCAAGATCCTCAAGAACCTGTGCGGCTCTGTGTGCGTGGACTCCCTGCTGACCCCCTGTGCGGCCTGCCCCGTGCCCCTGCCCCCCGGCCAGGAGCCCTCGAGAGGGGTCAACTCTGAAAAAGATGGCATGCACCACTCTGTTAACAAGACTAAAGGGATTATAACGTTGTACCGGCACCAGAAGGAAGCATTTGCCATCACCAGCAGGAGAGGGCCTACTCCCAAGGCCCAGAAAAGCCCAAACGCGGACCTCCCTCTGGGCACCGGGGCCACGGCAGAAGTGGACGAGAGTAAAAAGCCCTGCCTGGTGCAGAGACGAGGAGCCGAGTTCGCTCTCACCGTCATAGCGAGACATTTTGGTCCGGACTTGACCACCGGGCTCCCACACCTCTGGGACTCGATGGTGGGGCTCTTGAGGAGCTCTATTGATGTAAACAACTTCGTTGGGAAGCTCCTGCTGGAGAAGGGAGATGGGGCGGCTCAGGAGCTGGTGAATTCGTTACAGGTTCTGGAGATCACCGCCGGATCGATGGCCTCGGAGCTCATTCCTCTGCTCTTGCAGCACTTGCCTCACTTGTGCACGTGCCTGCAGCACCCCTACACAGCGGTCCGGCACATGGCGGCGCGCTGCGTGGGCGTCCTCAGCAAGATCGCGACTTTGGAAACCATGAACGTCTTTCTGGAGAGGGTCCTGCCCTGGCTCGGGGCGATCGATGACAATACCAAGCAAGAGGGAGCCATCGAGGCCATGGCCTGTGTGATGGAGCAGCTGGAGGTGGACATCGTGCCGTACATCGTGCTGCTGGTGGTGCCCGTGTTGGGCCGCATGAGTGACCAGTGCGACAGCGTGCGCTTCATGGCCACGCAGTGCTTCGCCACGCTCATCCGGCTGCTGCCCCTGGAGGCCGGAATTCCAGACCCTCCCAACATGTCCGAGGATCTCATCAGACAGAAGGCCAGAGAGAGGCACTTCCTCGAACAGCTTTTGGACGGAAGGAAGCtggaaaattacaaaatccCTGTCCCCATTAAAGCAGAGCTCAGAAAATATCAGCAGGATGGTGTGAACTGGCTGTCGttcttaaacaaatataaactgcATGGCATCCTGTGTGACGACATGGGATTGGGAAAGACGTTGCAGTCCATTTGCATTCTGGCAGGAGACCACTACCTCAGgGCGCAAGAATATGCAAAATCCAAGGCAGCCGACTGTTCCCCCCTGCCGTCTCTGGTGGTCTGTCCCCCCACGCTGACTGGGCATTGGGTGGATGAGGTGGGCAAGTTCTGTGCCAGGGAATATCTGAACCCCCTGCACTACACCGGACCCCCAACCGAAAGGGCCAGGTTGCAGCACCAAGTGAAAAAGCACAGTCTAGTGGTGGCCTCGTATGACGTCGTGCGGAACGATATCGACTTTTTCCGGAATATTAAGTTTAATTACTGTATCCTCGATGAAGGCCACGTGATCAAGAACGGGAAGACGAAGCTCTCGAAGGCGGTGAAGCAGTTGGCGGCCAACTATAGGATCATTCTCTCTGGGACACCGATCCAGaacaatgTGTTGGAGCTCTGGTCCCTGTTTGACTTCCTGATGCCAGGCTTCCTGGGCACCGAGCGCCAGTTTGCGGCTCGCTATGGGAAACCCATTTTGGCCAGCAGGGATGCCAAGAGCTCCTCCCGGGAGCAGGAGGCGGGTGTTCTTGCGATGGAGGCGCTGCATCGCCAGGTCCTGCCTTTCCTCCTGAGAAGAATGAAGGAGGACGTCCTACAGGATCTCCCTCCCAAGATCATTCAGGATTACTACTGCAACCTCAGCCCCCTGCAGGTCCAGCTTTACGAGGACTTTGCCAAGTCTCGTGCAAAGGTCAGCGTCGAGGACACCATATCGACGTCGGCTCTAGAAGAGGAAACCGAAAAACCAAAGCTCAAAGCCACCGGACATGTATTCCAAGCTTTGCAGTACTTGAGAAAACTATGCAACCACCCCGCGCTGGTCCTCACCCCGCTGCACCCCGAGTACAAGCGCATCAGCGACCAGCTCCTCTCCCAGCACTCCAACCTCCGGGACATCCAGCACGCGCCCAAGCTGTCGGCGCTGAAGCAGGTGGGTACCGGCTCCGCTCCCCCCCCGCCTGGCACGCAGGGCGCTGTGTTCATCCGCGTAGGCGCTGCGGAGACACGTTTGCTCCTGGACTGCGGTTTGGGCAACGGCGGCTCTGCAGACGGGGGTACCGAGGCCGTGGTTGCCCAGCACAGAGTGCTCATCTTCTGCCAGCTGAAGAGCATGCTGGACATCGTGGAGCACGACCTGCTCAAGCCCCAGCTGTCCTCCGTCACCTACCTGAGGCTGGATGGCAGCGTGCCGGCTGGGCAGAGACACGCCATCGTGGCACGATTTAACAACGATCCCTCGATAGACGTGCTCTTGCTCACCACCCACGTGGGTGGCCTGGGTCTGAATCTGACCGGTGCCGACACCGTGGTGTTCGTGGAGCACGACTGGAACCCGATGCGGGATCTGCAGGCCATGGACCGAGCGCACAGGATCGGACAGAAACGCGTGGTGAACGTGTACCGGCTGATCACCAGAGGCACGCTGGAGGAGAAGATCATGGGGCTGCAGAAGTTCAAGATGAGCATCGCCAACACGGTCATCAGCCAGGAGAACGCCAGCCTGCAGAGCATGGGCACCGACCAGCTCCTCAACCTGTTCACCCTGGACAAGGACAAGGCCGAGAAAGGAGAGTCGTCGGGGTCCTCGGGAAAAGCCTCCATGAAGTCAGTCCTCGACAGCCTGGGGGACCTCTGGGATCAACAACAGTACGACGCCGAATACGACCTGGAAAACTTCATGCATTCGTTAAAGTAGCGCCTCCGCTTCCCTGCTGATATTCAGCACACAGCGCCCTCGCTCGTGTGGTTGCGCTTCTGTACGTTTTGGATAGAAACCCATTTACAACTTGGATGTGCCGGGGGacaattaaaaaagtgtctTAAGGTTTTCCGCTTTGTTCTGCGTGTGTACGCTTGTTCGTTGGCCGGCGGACGGGGAGCGGTCTGGCCGTCCGTTCTGTAGTCCGGCTCCTCTGCGTTCCCTTCATTCACGCTTGGTTCAGATTCCCCTTGCCTCCCCGGATCTGTAGATCTCACATTATCTAATGTTCCGTCTGTTAATTTCACTTATTCTCGGCCCTCTCAGGACTCTGTGATATCGAGGGTGTCCCCTCGGCCGGCTGTCAATATGAACGCTTCCCACGGGACTCTCACCCGACCCGGGCTGCCATGTTGGCCGCTGTGGGTGCCGTTCTGTCCGACGCTGTGTGCCGagtgcttttttcccccccatttttttttttttacgcaCAGGCTAGTATAATTTGATATCCTCAGCCTCTCTCAAGAAGAAACGGTCGAGCGACTCTTTGGTATGTGCTGAACGCAAACCAAACCCCTTGGCGGTTCCCGAAGATTTTAAGCGAGCAAAAGGATCCCCAACTCCACGGTCGTCTCGTACGGCGAGGAGCGTTTGCTTGCGGACCCTCACAGTGACGCCTCCGGCCGCTCGGGGGGTAGCAGATACAGTTCCTCTACCAGGGAGGGTGTTTTAAatcactgaaatgtaaatatttctgtaagTGCTGTTTTGTTAAAGCTGAT

Function

symbol description
btaf1 Predicted to enable ATP binding activity and hydrolase activity. Predicted to be located in nucleus. Orthologous to human BTAF1 (B-TFIID TATA-box binding protein associated factor 1).

NR:

description
PREDICTED: TATA-binding protein-associated factor 172-like

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K15192 BTAF1, MOT1; TATA-binding protein-associated factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002858 True 6833 mRNA 0.57 38 4775371 4796304

Neighbor

gene id symbol gene type direction distance location
AMCG00002852 LOC107562385,LOC104957417 coding upstream 7695 4763141 ~ 4767676 (+)
AMCG00002853 NA coding upstream 27230 4734674 ~ 4748141 (+)
AMCG00002849 NA coding upstream 201205 4568555 ~ 4574166 (+)
AMCG00002847 LOC104962727 coding upstream 210830 4533786 ~ 4564541 (+)
AMCG00002848 NA coding upstream 252687 4521062 ~ 4522684 (+)
AMCG00002861 march5,LOC107549154 coding downstream 54486 4850790 ~ 4867571 (+)
AMCG00002857 march5,LOC107586100,LOC107549154,LOC107676368 coding downstream 78579 4874883 ~ 4877336 (+)
AMCG00002863 LOC104965006 coding downstream 112197 4908501 ~ 4918521 (+)
AMCG00002862 NA coding downstream 132126 4928430 ~ 4933205 (+)
AMCG00002864 NA coding downstream 155796 4952100 ~ 4952405 (+)
G139044 NA non-coding upstream 62546 4626657 ~ 4712825 (+)
G139038 NA non-coding upstream 191204 4583865 ~ 4584167 (+)
G138946 NA non-coding upstream 698583 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 750626 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 785023 3989924 ~ 3990348 (+)
G139084 cpeb3 non-coding downstream 2309 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 271168 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 443046 5239350 ~ 5239490 (+)
G139238 NA non-coding downstream 570131 5366435 ~ 5366683 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 643473 5439777 ~ 5442279 (+)
G138941 NA other upstream 745447 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1179263 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1659290 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2280777 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3365283 1406611 ~ 1410088 (+)
G139176 NA other downstream 300427 5096731 ~ 5098744 (+)
G139492 NA other downstream 1351444 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2270551 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2580383 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3112948 7909252 ~ 7920908 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_07598849_07621310 BTAF1 coding CI01180000 null 7598233 ~ 7621310 (-)