AMCG00002857 (march5,LOC107586100,LOC107549154,LOC107676368)


Basic Information

Item Value
gene id AMCG00002857
gene name march5,LOC107586100,LOC107549154,LOC107676368
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4874883 ~ 4877336 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002857
ATGTATGGTGGACAAGTACATCCTAAGAATGAGAAGactgtgctgtgctgtccgGCAGGTCCTGTGGTGTACGTGCTGGACCTGGCCGACCGCCTCATCTCCAAAGCCTGCCCGTTCGCCGCCGCGGGGATCATGGTGGGATCCATCTACTGGACCGCAGTCACATACGGGGCCGTCACTGTCATGCAGgTCGTGGGACACAAGGAAGGCCTGGACGTGATGGAGAGGGCGGACCCCCTGTTCCTGCTCATCGGCCTCCCCACCATCCCCGTCATGCTGATCCTGGGCAAGATGATCCGCTGGGAGGACTACGTGCTGCGGCTGTGGCGCAAGTACTCCAACAAACTGCAGATTCTGAACAGTATTTTTCCAGGGATCGGCTGCCCGGTCCCGCGCATCCCAGCGGAGGCCAGCCCCCTCGCCGACCACGTCTCGGCCACGCGCATCCTCTGCGGCGCCCTGGTGTTCCCCACCATCGCCACCATCGTGGGCAAGCTGATGTTCAGCAGCGTCAACTCTAATCTACAGCGGACGATTCTGGGTGGAATCGCCTTCGTTGCCATCAAAGGGGCGTTCAAGGTGTACTTCAAACAGCAGCAGTACCTGCGCCAGGCCCACCGCAAGATCCTCAACTACCCCGAGCAGGAGGAGGCCTGA

Function

symbol description
march5 Predicted to enable zinc ion binding activity. Acts upstream of or within convergent extension. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; eye; and optic vesicle. Orthologous to human MARCHF5 (membrane associated ring-CH-type finger 5).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH5

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002857 True 657 mRNA 0.61 5 4874883 4877336

Neighbor

gene id symbol gene type direction distance location
AMCG00002861 march5,LOC107549154 coding upstream 7312 4850790 ~ 4867571 (+)
AMCG00002858 btaf1,LOC107679172,LOC106604898 coding upstream 78579 4775371 ~ 4796304 (+)
AMCG00002852 LOC107562385,LOC104957417 coding upstream 107207 4763141 ~ 4767676 (+)
AMCG00002853 NA coding upstream 126742 4734674 ~ 4748141 (+)
AMCG00002849 NA coding upstream 300717 4568555 ~ 4574166 (+)
AMCG00002863 LOC104965006 coding downstream 31165 4908501 ~ 4918521 (+)
AMCG00002862 NA coding downstream 51094 4928430 ~ 4933205 (+)
AMCG00002864 NA coding downstream 74764 4952100 ~ 4952405 (+)
AMCG00002866 exoc6,LOC107695547,LOC107654070 coding downstream 86621 4963957 ~ 5008745 (+)
AMCG00002867 LOC108412396,LOC103044660,LOC104928862,LOC105891210 coding downstream 134843 5012179 ~ 5024583 (+)
G139084 cpeb3 non-coding upstream 72639 4798613 ~ 4802244 (+)
G139044 NA non-coding upstream 162058 4626657 ~ 4712825 (+)
G139038 NA non-coding upstream 290716 4583865 ~ 4584167 (+)
G138946 NA non-coding upstream 798095 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 850138 4024442 ~ 4024745 (+)
G139170 NA non-coding downstream 190136 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 362014 5239350 ~ 5239490 (+)
G139238 NA non-coding downstream 489099 5366435 ~ 5366683 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 562441 5439777 ~ 5442279 (+)
G139351 NA non-coding downstream 940716 5818052 ~ 5819125 (+)
G138941 NA other upstream 844959 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1278775 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1758802 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2380289 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3464795 1406611 ~ 1410088 (+)
G139176 NA other downstream 219395 5096731 ~ 5098744 (+)
G139492 NA other downstream 1270412 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2189519 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2499351 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3031916 7909252 ~ 7920908 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006879 march5 coding NC_007124.7 CM002897.2 42361599 ~ 42400647 (-)