AMCG00002762


Basic Information

Item Value
gene id AMCG00002762
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1406611 ~ 1410088 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002762
CAGTTTAAGAGTCTAACCTGATTAAGTAATCACTCGTAAATCACATGCATAATATTCACAAAATTAATAATCAcaagtgtatttaaaacacTGATATGATACACATGTTTGGGATATAGTGAAGGGGAGACATGAAAGGGTATAAAGAACAATCTCAAAGTAGATGTCGACGGGTAGGGAATTGCAGTATTTTGCCCCTCACAAATATGGCCGCGTTGCtgttgcgcagatctgcagaatcccgccgatcccattggtgcaaccgcgcagaactgcggacatctgcgccacACGACTGCGACCTGTAGTTTTACCGTGTGCGTCCTAGCGTCATGTGCTAAGCGTGCGATCTGATTGGTGGTTGTGCTCCCTGTACGTCTAATCTGATTGGTGGTTGTGCTTCCTGGGTGGCAGAAAGAGCTAATGAGAAAAGTCTCAAGGTTTGATGTGAGACTTTCAAAGGGCATGGGAACTTAAAACACAACAAGGAAGTGTACCTGAAGGATCAATCAAAGCGCTGTATACAATATATCTTAATAGacataaagtatatatattgtgtttgtttttgcataaaACCAATTAGCTGCTCAGTCGTGGGTATTTGGTGAAGATCGCTGCAAGTCCTGTATTAACCTGGGAGACACAATGGCAGTTTCCATGGATTGTGTGATTGCGGGTCAGAATAAACGGCGCCATGAGCTAGAGCTGGAAAACTGGCAGCATTTAAATCCAGCGAAGCGGTTTTGTGGCGCTTTGGGCAGATGTGAGCAGTTTGAAAATGGCGCTGTGGCTGAAAGCCCCATGGAGACCTGGGACCCACAGCAGCCAGGACTTCCACAGGATCCCTGTGTGAACAGCCCGGCGTCTCTCACTTTCACTGCCAGCCAGAGCCACGACATGAacactgtgtctcagtgtggtgGTTTAGCACAGCCCTGTGTACGATGCCTGGCTGGGGAGTCTGGTCATATTAACCACATCATGGGATTCTGACACTCTGGTGCAGTGGGGATACTGAAGACCTCTCAGTGCTTCAATGGAGGATATAGGATCCACAAGTGGAGTCTCTTCACTGCACTCACCGCTCAGTGCGTTTAACGTTTCAGTCACGAAATGATACTGAGCTAATACTAGaactgtcatttgtttttgaacTAACGGGCCAGTATTCAGAAGGGCTAGATGTCTACAGTACGTCCTCAGAACCGCGGATGCCTTAAAGGAAGGGAGCCAATAACATGCCATGTGTTACCATACTGTGTTGAGACCACTAATCCTACCAAGAAGTGTTGTGCCTTATTCTGTACAGCAGTGAATCACTTCAGTTTTGTtccttcattttgaaaaatacgATTTTATTTAGGACAAATATTGTGATGATATTTTTATACTTCATCCGTGTATAGATGTATATTTGAGTTAGAATCTACTTTTAATTATCTAAAAGTACAATTATTAATATGGCgttttagtatgttttttttttatgtgagtGGAAATCTCCTTTAATTTTTGTAAACCGAACTGCATACAACGTATGCTGGCCTTATTTAGCAAATTGATTAAACAATCTACAGCATAGTATTGTACCGGTTATGAAAATTGTTATATTGGAAGGATTTAATGATTTAGACTTTTTAATTCACAATCAACTGTTTAGGGATAAATAGGAGATTTGATGTTGGGAAATGTCAGATATCTGTATTGCGTTTTTATGTaaagtgaagttttttttttaccctagCAGTTTAACACTTGag
>TU174215
TCAAGGTTTGATGTGAGACTTTCAAAGGGCATGGGAACTTAAAACACAACAAGGAAGTGTACCTGAAGGATCAATCAAAGCGCTGTATACAATATATCTTAATAGacataaagtatatatattgtgtttgtttttgcataaaACCAATTAGCTGCTCAGTCGTGGGTATTTGGTGAAGATCGCTGCAAGTCCTGTATTAACCTGGGAGACACAATGGCAGTTTCCATGGATTGTGTGATTGCGGGTCAGAATAAACGGCGCCATGAGCTAGAGCTGGAAAACTGGCAGCATTTAAATCCAGCGCGGTTTTGTGGCGCTTTGGGCAGATGTGAGCAGTTTGAAAATGGCGCTGTGGCTGAAAGCCCCATGGAGACCTGGGACCCACAGCAGCCAGGACTTCCACAGGATCCCTGTGTGAACAGCCCGGCGTCTCTCACTTTCACTGCCAGCCAGAGCCACGACATGAacactgtgtctcagtgtggtgGTTTAGCACAGCCCTGTGTACGATGCCTGGCTGGGGAGTCTGGTCATATTAACCACATCATGGGATTCTGACACTCTGGTGCAGTGGGGATACTGAAGACCTCTCAGTGCTTCAATGGAGGATATAGGATCCACAAGTGGAGTCTCTTCACTGCACTCACCGCTCAGTGCGTTTAACGTTTCAGTCACGAAATGATACTGAGCTAATACTAGaactgtcatttgtttttgaacTAACGGGCCAGTATTCAGAAGGGCTAGATGTCTACAGTACGTCCTCAGAACCGCGGATGCCTTAAAGGAAGGGAGCCAATAACATGCCATGTGTTACCATACTGTGTTGAGACCACTAATCCTACCAAGAAGTGTTGTGCCTTATTCTGTACAGCAGTGAATCACTTCAGTTTTGTtccttcattttgaaaaatacgATTTTATTTAGGACAAATATTGTGATGATATTTTTATACTTCATCCGTGTATAGATGTATATTTGAGTTAGAATCTACTTTTAATTATCTAAAAGTACAATTATTAATATGGCgttttagtatgttttttttttatgtgagtGGAAATCTCCTTTAATTTTTGTAAACCGAACTGCATACAACGTATGCTGGCCTTATTTAGCAAATTGATTAAACAATCTACAGCATAGTATTGTACCGGTTATGAAAATTGTTATATTGGAAGGATTTAATGATTTAGACTTTTTAATTCACAATCAACTGTTTAGGGATAAATAGGAGATTTGATGTTGGGAAATGTCAGATATCTGTATTGCGTTTTTATGTaaagtgaagttttttttttaccctagCAGTTTAACACTTGagaattttcaaataaaattgatttaaaattcc

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002762 True 1763 mRNA 0.42 4 1406611 1410058
TU174215 False 1355 TUCP 0.40 4 1407046 1410088

Neighbor

gene id symbol gene type direction distance location
AMCG00002759 NA coding upstream 140634 1250825 ~ 1265977 (+)
AMCG00002761 NA coding upstream 190447 1204818 ~ 1216164 (+)
AMCG00002760 NA coding upstream 299065 1103748 ~ 1107546 (+)
AMCG00002753 NA coding upstream 397655 991584 ~ 1008956 (+)
AMCG00002746 NA coding upstream 502257 899823 ~ 904354 (+)
AMCG00002763 ebf3 coding downstream 19903 1429991 ~ 1436902 (+)
AMCG00002766 LOC108249661,LOC105028844,LOC106604646,LOC106611650,LOC106613918 coding downstream 72928 1483016 ~ 1492755 (+)
AMCG00002765 NA coding downstream 94909 1504997 ~ 1513084 (+)
AMCG00002770 NA coding downstream 609150 2019238 ~ 2022826 (+)
AMCG00002774 NA coding downstream 823199 2233287 ~ 2240892 (+)
G138502 NA non-coding upstream 11348 1375707 ~ 1395263 (+)
G138475 NA non-coding upstream 317795 1088439 ~ 1088816 (+)
G138399 NA non-coding upstream 468116 938147 ~ 938495 (+)
G138393 NA non-coding upstream 495531 909387 ~ 911080 (+)
G138385 NA non-coding upstream 556938 843528 ~ 849673 (+)
G138562 NA non-coding downstream 528059 1938147 ~ 1939125 (+)
G138593 NA non-coding downstream 650289 2060377 ~ 2060604 (+)
G138634 NA non-coding downstream 1051550 2461638 ~ 2463636 (+)
G138712 NA non-coding downstream 1255370 2665458 ~ 2667538 (+)
G138719 NA non-coding downstream 1281341 2691429 ~ 2691840 (+)
G138506 NA other upstream 4182 1401289 ~ 1402429 (+)
G138476 NA other upstream 309136 1095939 ~ 1097475 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other upstream 313532 1089278 ~ 1093079 (+)
AMCG00002748 NA other upstream 476013 925231 ~ 930598 (+)
G138394 NA other upstream 493079 911110 ~ 913532 (+)
AMCG00002784 NA other downstream 1081998 2492086 ~ 2494594 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other downstream 1697370 3107458 ~ 3116081 (+)
G138888 grid1,LOC106607602 other downstream 2018601 3428689 ~ 3596108 (+)
G138941 NA other downstream 2619436 4029524 ~ 4029924 (+)
G139176 NA other downstream 3686643 5096731 ~ 5098744 (+)

Expression


Co-expression Network