G139176


Basic Information

Item Value
gene id G139176
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5096731 ~ 5098744 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175054
CGTCTGCGGGAGGAGACTGAGAGAGATTTAAATCCCCCGGGTTGCGCTCGACTCGCAAACGCCTCAATCACAGTTATTTTGTCGTCGGTCGCGGCGCCTTTTCTGGCTCTTTCTTCCCTCCCTTCTCTCGTCTTAAACGCCGTTTTTACCGAGAAAATGTCCGACCGTTAGGGCGTCGCTGTTGAAGTTTTCCGagggttttttccccccactctctcGGCGAGGCCATGGCGGTGGACGCGCGGCCGGAGCTGGTCGGGAAGCGGTTCCTGTGCGTCAGCGGAGAGGAGCTGCCGGAGCTCGGGGAGATCGGGCGCTGGGGCTGGCGAGCCGGGGTCATCCGGGCGGTCTCCCACCGGGACAACGACAACCCGGAGCTCACGGGTTGTGGCTTGAGGTCATCAACTGTAGCAGTGCTAAGCAGCAAAAACGGGCTTCGGTATGAGTTCTCCATGAAGAATAGCCGTTTGACTGGGACccacacacagtgagagaggTGGTTTGACAAGTGAAATGACAATACAGCACTTACAACATTTAAGTTATTGTGTTTCATTTATGTAGCTCAGAAATTATAACCCAAGAGAGCTATTGAGGCACGGTTT

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175054 True 605 TUCP 0.55 2 5096731 5098744

Neighbor

gene id symbol gene type direction distance location
AMCG00002867 LOC108412396,LOC103044660,LOC104928862,LOC105891210 coding upstream 72148 5012179 ~ 5024583 (+)
AMCG00002866 exoc6,LOC107695547,LOC107654070 coding upstream 87986 4963957 ~ 5008745 (+)
AMCG00002864 NA coding upstream 144326 4952100 ~ 4952405 (+)
AMCG00002862 NA coding upstream 163526 4928430 ~ 4933205 (+)
AMCG00002863 LOC104965006 coding upstream 178210 4908501 ~ 4918521 (+)
AMCG00002868 jmjd1c,LOC108412835 coding downstream 54560 5153304 ~ 5187446 (+)
AMCG00002871 egr2,LOC107596614,LOC107596611,LOC107739063,LOC107745678,LOC107653961,LOC107593522 coding downstream 133238 5231982 ~ 5233827 (+)
AMCG00002872 NA coding downstream 178171 5276915 ~ 5285072 (+)
AMCG00002881 NA coding downstream 281869 5380613 ~ 5383693 (+)
AMCG00002882 NA coding downstream 285108 5383852 ~ 5386429 (+)
G139170 NA non-coding upstream 27836 5067472 ~ 5068895 (+)
G139084 cpeb3 non-coding upstream 294487 4798613 ~ 4802244 (+)
G139044 NA non-coding upstream 383906 4626657 ~ 4712825 (+)
G139038 NA non-coding upstream 512564 4583865 ~ 4584167 (+)
G138946 NA non-coding upstream 1019943 4072281 ~ 4076788 (+)
G139205 NA non-coding downstream 140606 5239350 ~ 5239490 (+)
G139238 NA non-coding downstream 267691 5366435 ~ 5366683 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 341033 5439777 ~ 5442279 (+)
G139351 NA non-coding downstream 719308 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 1039377 6138121 ~ 6140671 (+)
G138941 NA other upstream 1066807 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1500623 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1980650 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2602137 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3686643 1406611 ~ 1410088 (+)
G139492 NA other downstream 1049004 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1968111 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2277943 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2810508 7909252 ~ 7920908 (+)
G139784 NA other downstream 2824438 7923182 ~ 7926832 (+)

Expression


Co-expression Network