AMCG00002939 (ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527)


Basic Information

Item Value
gene id AMCG00002939
gene name ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7066855 ~ 7073538 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002939
TTTAAGAGCGAAACCGACGCCTGGAAACTAcaattcccacaatgcacccgCCTTCATGCTTCCCTGAACAAAAAGCGGAAACAAAAGAAATCAAAAATCCTAAAACACACCCTTAGCGAGCGGCTGGGAGAAATAGAAAGTGTTTGGGCTGCTTCAGTAGAAAACATAGAAACGACACAAAACGACAGCGGCGACTCGTGTGAGGCTACCGGGCTTTGGTCGTGATGGCTTTGAAAAGAATACAGAAGgaaCTACATGACTTGCAAAGGGATCCTCCTGCGCAGTGCTCAGCTGGACCAGTTGGGGATGACTtGTTTCATTGGCAAGCAACAATAATGGGACCTAGTGACAGCCCATACCAAGGAGGAGTTTTCTTTCTCACAATCCACTTTCCCACGGATTATCCCTTTAAACCACCAAAGATACAACAGACTAGCAAGAGAATGGACCCAGAAGTATGCAATGTAAAGACCTAACAGAAGATTTTTAAGTCACAACGCACTGTAAATTCTAGAAtctaaaaaagttaaaattaggtAATATTATTGAACACAATGTACTGTTAACATttatcattaaaacaattaccataaatgaatgaagatttagtattttacagGAAAAGACTCTTGTCCaaaaaattacatgaaaagGTTTAACAGATTTTGTgcatttcagtcttttttttgttttttttttttttttcctccctcatttagcacttctgtttttcttggtttaaaaatcccattaaaactaaattgtaaAACAGCTCTTTTGCTGTGGTCACCCATATgtttagaaaaaacattatttacttcattaaaaagtgttttctttttttcatcctGTAGGTAATTTCTAATTTTTCTTCTAGAGATTTTTATTGTATAGTATAAATGCTATACtgaatctatttttattattttgcattaaaagtaaaaaagaaataaacctgCAATGTTGTGAATTTGCTACTTTTGTCCACACTTCTGCCATGCATTACCTTTTGTTTTCCACACTTcgcagcgtgtgtgtgtgtgtgcgtgcgtgcgcgtgtgtgtatatatatataaaaatataaaatatactggAATAGACTGGAAGATTTCCTTGTGTGACAGTGTTCAGCTTATGCATTGTTAGAAACCTCATCGGACCATTCTAATcttaaagtatattttacaCAATGTACATGTAACATCTAGATTAAAAGGAAATGAGTTAAAAGGTTGATCACTTGGGTCATTTTactattttcctgttttttgaGGTTTACTTTTTACTTGTGTGCAGAAAGCCAACTGAAAAAGTCCTATTAAATGTGATACTATGGGGAAATAAAGTTTAATTACCTGTGTTTACCTTGATACACTCAggcatttcttttaaatcaaaattgtggagatggttttaaaatgcatagatGAGGAATAAAATCAGCTTGTCCCCTTGAAGTTGTGGGTGTTGGTACAAATGTCTAAACATGAAAGGAATACAATAGTTTAAATCTGACTTTGCCTTCACTGGGTTTCTGTGTTCCCTTCTGTGGGAGAAGAACTAAATGTGGGCTTCAAAGACtcccaataaatatttaaaatgctctgGGCACATTTATTAGTTCAGTTGTGGCTCAGCTGCAACTTTAAGACATGTGGCCTCAAATGTTTTGAATGGAGGTCTTCTCATTTGCAGGACAAAAACTGGCATTTTGAATGAATGATTTGACTCCCtttgtttaaataactaaaatgtggTGTTTAGCCTTTTTCATATATTCTTTGCTTTACCAGAAGCTTACTTTGAAAGGTCATTGCTTGTGCtgggatgctttttttttttttcttatgtagtaaaataaagtataatttttACCATGTAGA
>TU175613
AATCAAAAATCCTAAAACACACCCTTAGCGAGCGGCTGGGAGAAATAGAAAGTGTTTGGGCTGCTTCAGTAGAAAACATAGAAACGACACAAAACGACAGCGGCGACTCGTGTGAGGCTACCGGGCTTTGGTCGTGATGGCTTTGAAAAGAATACAGAAGgaaCTACATGACTTGCAAAGGGATCCTCCTGCGCAGTGCTCAGCTGGACCAGTTGGGGATGACTtGTTTCATTGGCAAGCAACAATAATGGGACCTAGTGACAGCCCATACCAAGGAGGAGTTTTCTTTCTCACAATCCACTTTCCCACGGATTATCCCTTTAAACCACCAAAGgtagcatttacaacaaaaatatatcatccaaatataaacagtaatGGAAGTATTTGCCTGGACATTTTGAGATCACAGTGGTCCCCAGCACTAACAGTATCAAAAGttttattgtCCATATGTTCATTGCTTTGTGACCCCAACCCTGATGACCCCTTAGTTCCAGATATAGCACACATCTACAAGTCAGACAAAGAAAAATACAACAGACTAGCAAGAGAATGGACCCAGAAGTATGCAATGTAAAGACCTAACAGAAGATTTTTAAGTCACAACGCACTGTAAATTCTAGAAtctaaaaaagttaaaattaggtAATATTATTGAACACAATGTACTGTTAACATttatcattaaaacaattaccataaatgaatgaagatttagtattttacagGAAAAGACTCTTGTCCaaaaaattacatgaaaagGTTTAACAGATTTTGTgcatttcagtcttttttttgttttttttttttttttcctccctcatttagcacttctgtttttcttggtttaaaaatcccattaaaactaaattgtaaAACAGCTCTTTTGCTGTGGTCACCCATATgtttagaaaaaacattatttacttcattaaaaagtgttttctttttttcatcctGTAGGTAATTTCTAATTTTTCTTCTAGAGATTTTTATTGTATAGTATAAATGCTATACtgaatctatttttattattttgcattaaaagtaaaaaagaaataaacctgCAATGTTGTGAATTTGCTACTTTTGTCCACACTTCTGCCATGCATTACCTTTTGTTTTCCACACTTcgcagcgtgtgtgtgtgtgtgcgtgcgtgcgcgtgtgtgtatatatatataaaaatataaaatatactggAATAGACTGGAAGATTTCCTTGTGTGACAGTGTTCAGCTTATGCATTGTTAGAAACCTCATCGGACCATTCTAATcttaaagtatattttacaCAATGTACATGTAACATCTAGATTAAAAGGAAATGAGTTAAAAGGTTGATCACTTGGGTCATTTTactattttcctgttttttgaGGTTTACTTTTTACTTGTGTGCAGAAAGCCAACTGAAAAAGTCCTATTAAATGTGATACTATGGGGAAATAAAGTTTAATTACCTGTGTTTACCTTGATACACTCAggcatttcttttaaatcaaaattgtggagatggttttaaaatgcatagatGAGGAATAAAATCAGCTTGTCCCCTTGAAGTTGTGGGTGTTGGTACAAATGTCTAAACATGAAAGGAATACAATAGTTTAAATCTGACTTTGCCTTCACTGGGTTTCTGTGTTCCCTTCTGTGGGAGAAGAACTAAATGTGGGCTTCAAAGACtcccaataaatatttaaaatgctctgGGCACATTTATTAGTTCAGTTGTGGCTCAGCTGCAACTTTAAGACATGTGGCCTCAAATGTTTTGAATGGAGGTCTTCTCATTTGCAGGACAAAAACTGGCATTTTGAATGAATGATTTGACTCCCtttgtttaaataactaaaatgtggTGTTTAGCCTTTTTCATATATTCTTTGCTTTACCAGAAGCTTACTTTGAAAGGTCATTGCTTGTGCtgggatgctttttttttttttcttatgtagtaaaataaagtataatttttACCATGTA

Function

symbol description
ube2d1b Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).
ube2d1 Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase activity. Involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytoplasm. Part of ubiquitin ligase complex.

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 D4-like

GO:

id name namespace
GO:0035519 protein K29-linked ubiquitination biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0085020 protein K6-linked ubiquitination biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0044314 protein K27-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002939 False 1883 mRNA 0.35 5 7066855 7073538
TU175613 True 1993 TUCP 0.35 7 7066943 7073536

Neighbor

gene id symbol gene type direction distance location
AMCG00002931 NA coding upstream 485825 6578983 ~ 6581030 (+)
AMCG00002929 LOC106578950,LOC106589397 coding upstream 491584 6556470 ~ 6575271 (+)
AMCG00002930 prkg1,prkg1b,LOC107708873,LOC107695529,LOC106589397 coding upstream 602579 6463713 ~ 6464276 (+)
AMCG00002928 LOC106589397 coding upstream 611714 6454872 ~ 6455141 (+)
AMCG00002926 NA coding upstream 647472 6410426 ~ 6419383 (+)
AMCG00002938 NA coding downstream 1736 7075274 ~ 7077227 (+)
AMCG00002937 bicc1,bicc1b,LOC107653928,LOC107695510,LOC107596591 coding downstream 58638 7132176 ~ 7152164 (+)
AMCG00002940 phyhiplb,phyhipl,LOC107654056,LOC107746456,LOC107695536,LOC107727060 coding downstream 92980 7166518 ~ 7189805 (+)
AMCG00002943 NA coding downstream 152251 7225789 ~ 7267878 (+)
AMCG00002944 NA coding downstream 198389 7271927 ~ 7310924 (+)
G139633 NA non-coding upstream 481 7062523 ~ 7066374 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 643687 6420166 ~ 6423168 (+)
G139573 NA non-coding upstream 648057 6418438 ~ 6418798 (+)
G139531 NA non-coding upstream 755585 6297734 ~ 6311270 (+)
G139507 NA non-coding upstream 863796 6202844 ~ 6203059 (+)
G139656 NA non-coding downstream 78999 7152537 ~ 7152739 (+)
G139667 NA non-coding downstream 123340 7196878 ~ 7197097 (+)
G139827 NA non-coding downstream 879588 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 924675 7998213 ~ 7999259 (+)
G139836 NA non-coding downstream 929264 8002802 ~ 8003057 (+)
G139492 NA other upstream 913735 6147748 ~ 6153120 (+)
G139176 NA other upstream 1968111 5096731 ~ 5098744 (+)
G138941 NA other upstream 3036931 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 3470747 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3950774 3107458 ~ 3116081 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 303149 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 835714 7909252 ~ 7920908 (+)
G139784 NA other downstream 849644 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 964039 8037577 ~ 8044413 (+)
AMCG00002982 NA other downstream 1419467 8493005 ~ 8496965 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_01831728_01834017 UBE2D4, UBE2D4.L, UBE2D1A, UBE2D1B, UBE2D1 coding CI01000047 null 1831728 ~ 1834017 (+)