AMCG00002931


Basic Information

Item Value
gene id AMCG00002931
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6578983 ~ 6581030 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002931
AAACAACTCCACATGTATAAATCCGGCACCAGGACGCCTGGATCTTCAGAAAGTCGGCCACGAACTCCAGCTGAAGGCTTTCACAGGACTATACTGCAGGCAGCCCGACCGCACTGCGCTTCTTCTGCCACATCGCCGTTTCACCGCAAAGCTCGACCATGCATCTGCCTGTACCTGTGCTGCTGGCGGTGTGTTTTGCCCTGGGCGGGCACTGTGATGCCGGGCTGTTCAACTCCAATGCCATCAAGAACCTGCCCGGCGGAGCCCCGAACCCCGGGCACCCGGTCAGCGCCAGCCCGGACGTCATGACGTACGACAGCGACAACAAGAATGTGGCCATTGACACCTACCAGAGCTACACTTGCGCGGAGGACGAGGAGTGCGGCGCCGAGGAGTTCTGCTTCGGGTCCCGGGGGCTCTGCCTCTCCTGCCGGAAGCGGAGGAAGCGCTGCGCCCGGGACGCGATGTGCTGCCCGGGGAACCGCTGCAGCAATGGAGTGTGCTTGCCCGCTGATGCCGATGCAACGTTTCATGCTGGCATGGAAGAGAGTTTTCCTGACAGTTTTGCACCAGAATATCATTCCACCGTGGAGCCCCATCCCAGGCAAACTACTGTCCCTGCCAGACCGCAAACGCTTAAAGGTCAGGAAGGCGATGTGTGTCTGAGGTCCTCTGACTGCTCAGATGGCCTGTGCTGCGCTCGCCACTTTTGGTCCAAGATCTGCAAACCGGTCCTGAAAGAGGGACAGGTGTGCACCAGGCACCGAAGGAAAGGCACCCATGGTTTGGAGATATTCCAGCGCTGCGACTGTGGGGATGGTCTGGCCTGCCGGACGCAGAAGGGAGATCATAGCAGCAAGTCCTCCAGACTGCACACATGCCAAAGACACTGATCACTGCCTCCTACACGGCAACAAGAAGATGTTCATACGGCCCTTGGAAGGTTTAAAGACTGATGCTTTGGTTTTGTCGGAGCATTTCAAATGCTAGAAGAAGAGTTTacattctctgttttgtttttaatggcagaGAAGTGTTGATTGTTTCTCTTTTATGGAACTCCAGCTTCACATGAATTGCAGtaaattactgtattgtaaatattgaGGGTGGCACTTATGTTGTAATTCTGTTTATGGCAACACAAGTATTTTATGAGAAGGTGCTGCGTGGGTATCCTAAAACAAATTCTACCATactattgtatatttgtaaacaaTGTGATTATATGGATATTTAGAATCTGCTataaatgcctttattttttacatgaaataagaaatgtaaagatatttaagtgttttattgaaacataataaaaaaccTAACTAATGAA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0003197 endocardial cushion development biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0061011 hepatic duct development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0001889 liver development biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0007398 ectoderm development biological_process
GO:0030334 regulation of cell migration biological_process
GO:0030903 notochord development biological_process
GO:0005576 extracellular region cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K02165 DKK; dickkopf

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002931 True 1336 mRNA 0.51 4 6578983 6581030

Neighbor

gene id symbol gene type direction distance location
AMCG00002929 LOC106578950,LOC106589397 coding upstream 3712 6556470 ~ 6575271 (+)
AMCG00002930 prkg1,prkg1b,LOC107708873,LOC107695529,LOC106589397 coding upstream 114707 6463713 ~ 6464276 (+)
AMCG00002928 LOC106589397 coding upstream 123842 6454872 ~ 6455141 (+)
AMCG00002926 NA coding upstream 159600 6410426 ~ 6419383 (+)
AMCG00002925 NA coding upstream 169888 6397457 ~ 6409095 (+)
AMCG00002938 NA coding downstream 494244 7075274 ~ 7077227 (+)
AMCG00002937 bicc1,bicc1b,LOC107653928,LOC107695510,LOC107596591 coding downstream 551146 7132176 ~ 7152164 (+)
AMCG00002940 phyhiplb,phyhipl,LOC107654056,LOC107746456,LOC107695536,LOC107727060 coding downstream 585488 7166518 ~ 7189805 (+)
AMCG00002943 NA coding downstream 644759 7225789 ~ 7267878 (+)
AMCG00002944 NA coding downstream 690897 7271927 ~ 7310924 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 155815 6420166 ~ 6423168 (+)
G139573 NA non-coding upstream 160185 6418438 ~ 6418798 (+)
G139531 NA non-coding upstream 267713 6297734 ~ 6311270 (+)
G139507 NA non-coding upstream 375924 6202844 ~ 6203059 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding upstream 377513 6201203 ~ 6201470 (+)
G139633 NA non-coding downstream 481493 7062523 ~ 7066374 (+)
G139656 NA non-coding downstream 571507 7152537 ~ 7152739 (+)
G139667 NA non-coding downstream 615848 7196878 ~ 7197097 (+)
G139827 NA non-coding downstream 1372096 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 1417183 7998213 ~ 7999259 (+)
G139492 NA other upstream 425863 6147748 ~ 6153120 (+)
G139176 NA other upstream 1480239 5096731 ~ 5098744 (+)
G138941 NA other upstream 2549059 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2982875 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3462902 3107458 ~ 3116081 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 485825 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 795657 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1328222 7909252 ~ 7920908 (+)
G139784 NA other downstream 1342152 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1456547 8037577 ~ 8044413 (+)

Expression


Co-expression Network