G139720 (LOC103376252,LOC104927182,LOC102078543,LOC101474510)


Basic Information

Item Value
gene id G139720
gene name LOC103376252,LOC104927182,LOC102078543,LOC101474510
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7376687 ~ 7379487 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175723
taTGCCTACACATTTCaggtttaattatttacattgtaaatatgaacatatttacagtttccatttcGTATATTACAACTTTGCATTCTGGAAATTGTAgtatctaaaaaataataaacactgaatACAGACACTCTGGTACTGAAACTCAGGATTTAATttgatacattacattttaagtaatcCTAAGTGTTTCAGAGATTAATATGACATATTGCATGTTTCTAATAGCAGCACACACCAGGCAAGATGGTTACAGCGTACAatattgttaaagaaaaaaaaaacacgttggTTTTCTTCGTATGAATACGAAAACATGTGACacttatatacagtatttaatatttatttctgtttaggTCCctgaatatgcaaatatatttttggaatacatatatatttatttaactttttacaatgatatacaatatttatgcaCACACCTTTAACTTTATTAAACTTTGCACAATACTCCAATTATACGTCTAGGTGGATGATGTTCTTACTACAGACTTGTTcaaatactattaaaaaaatattcattgCTTTACGGAGTTCTTTTGGAAGAaactgatgaaaatgaaatctgGAAGTAACTAGTTACACAATCATGATAAGGTAGGGTACATCTTATATTGCACATCGGTACATAACATGGTACTGATCCAACAGTCACAAaaactggtgtgtgtgtgtatgtgtgtgtgtttacagtttttatagtttttaatattttaactgtattcTGGCCCAGAAGAGTCCTCCTCTGAAAATGACCTACTTGTCTGTTGCCCTTTAAAAGTTTCAATACCATTCTCATCAGAAGGCATGCAGTTGCCGGCTGAACTAATAAAGCCCTTCTTCTTTGAATTGCGCTCTTCCATCTTTATGGTGTCGTACAGCCCTTTGGGTCCCTCTTCCAGAAGGACGTTTCTCTCCGAGTGAGAGGGTTTCATTTGGCACACGTTTCGGAGAAAAAGCAGGGCAGGTGCATAAAGTACATTGACGAGGCCCATACCCAGATTCAGTTGCACAAAACCAAGGTCGTGGACAATCTGCCCTGCCACGATGGGTCCCAGGGCATAGGCGACAGAGTAGGAGATATCTGCGATAGCATAGACACTGCCGTATACTGAAACATAACGTATGTCTACTAGAAAGGCGAGGGTGGGCAAGAGGGCAGTGTCCACGAGAGCTATGCCAAAGCAAATACCACACAATGGGGCAATAAGCTCTCCAAAGTTCCTACAAGCTGGTACAGTGCAGGAGCTTGCACCAATGATGACCATACCTAAAGCTCCGTAAAACCATTGATAGTTAGGGTATTCAGCAGCTAGTTTAACAGTAATATAAACACCTAGAACATGAGGGAAAAAAGCTGGCAACCAAATAAGTCCCATCTCCCATTTGGTGGCATTCATAGTGGATTCCATCCAGTTGGCAATTGTGGGCTCCAGGAAGGCCAAGGGGATGTTGCATGTTGTCAAAGCTCCTGCCACCACAGCAATATATGGGTCAATCATGAGTCTGTAAATGGGGGTGCCTACCGGCATGTTTTCTCTAGTCCTGTTACTGAAAGGTTTTATAACAGTCAGCAACAAGATGCCGTCTATTAGGCAGATACAAGCAAGAACAATGAATGGAACTCTTTTCCCTGCGAATTCGTATAAAATACCTCCAAAGGGGGGCGACACCAGGCTTCCGAAGGAGATGAAAGCCAGCGCAATGCCAAGGGCTTTACTTCTTTCGGACTCTTCTGTGTATTTGTCAGCTATCATGGCAATTCCAGACGTGTCAGCAAAGGCTGATCCCAGACCTTGCAAACTTCTCGCAATGAAGAGAGTGGCATAGTTTTCGGCAAAGGCAAATATACAGgtagaaaaaaacatgacagttAGTCCTATTAAAAGTGGGATGTCGTACCCAACTCGGTCTATGAAGGTTCCGCTCAAGGGGTTAACTAGAAGCTGTAGGATAGCTTTCGATGCAAACAAAACCCCAATTTGTACATCTAAGTTGTCCTTGGTGACTTTACCTTGGCTGGTACTGTTGATTGAAGAACTTGAGTTGACTGCTACATGGGCTTGCTCTGGTTGATCACCTTCTAAATAAGCAAGGTAATCTGGTATAATCGGCACAATAACCATATAAAGCATATTGTCTAACAGGAGTGCTATGCAGACAATTACTAAAATCATGCGTCTTTGTCGGTGAGGATCCTGCATAGCGGTACCTAACCGTTTAGTTCTTTCGCCCATCTCTGATAATTTCACTGCGGCGGATTTAGCCAGCCCGGGCGATCCCTCTGAAGCCATGATTCCCTCTACTTTCAAGAAACTTTCCTCttcacagcagcacagacaaACCTTTCTTTTACACTGAACCGATATAGTACtttctgtacatttatattCGCTTTTCGTGTGCTAAAGTCCTGTGATGCCAGCGCACTTTTCCCCTTTACCTGTCTCTGTGACAGTTCTGCATAGCCCTCTCCTCCCCTCAGCCTTGACTTGACGCGCAGTGATGCATCCTTGCTATCCGGGGTTATTTCATGGTTTCTTATCCCGTCAGAAGAAGTCTACTTTTTTCTCCAAGTTATGGGTTTGCCTGTGTATCCTCCATATCAATAAAGGAGTCTGTTAAGTTGAAAGTCCTGATGAAACCCGAGATGCGTGCGTCCGAAATGCATGTCTTCCACCACCTGTAACACTGCGAGGTATGTTCTCGTCTGAGATCAGCAATCCTGGTTTTGTGGCCATTGGCACGGTTTGCCTCGCATGTTTGTTGATTCTTTg

Function

NR:

description
PREDICTED: probable vesicular acetylcholine transporter-B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175723 True 2801 TUCP 0.41 1 7376687 7379487

Neighbor

gene id symbol gene type direction distance location
AMCG00002942 ogdhl,LOC107707496,LOC107683740 coding upstream 29739 7313942 ~ 7346948 (+)
AMCG00002944 NA coding upstream 65763 7271927 ~ 7310924 (+)
AMCG00002943 NA coding upstream 108809 7225789 ~ 7267878 (+)
AMCG00002940 phyhiplb,phyhipl,LOC107654056,LOC107746456,LOC107695536,LOC107727060 coding upstream 186882 7166518 ~ 7189805 (+)
AMCG00002937 bicc1,bicc1b,LOC107653928,LOC107695510,LOC107596591 coding upstream 224523 7132176 ~ 7152164 (+)
AMCG00002946 LOC108442250 coding downstream 32622 7412109 ~ 7425081 (+)
AMCG00002949 NA coding downstream 109884 7489371 ~ 7500590 (+)
AMCG00002952 pax2a,pax2 coding downstream 315872 7695359 ~ 7733537 (+)
AMCG00002955 NA coding downstream 433022 7812509 ~ 7821463 (+)
AMCG00002959 NA coding downstream 448604 7828091 ~ 7829718 (+)
G139667 NA non-coding upstream 179590 7196878 ~ 7197097 (+)
G139656 NA non-coding upstream 223948 7152537 ~ 7152739 (+)
G139633 NA non-coding upstream 310313 7062523 ~ 7066374 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 953519 6420166 ~ 6423168 (+)
G139573 NA non-coding upstream 957889 6418438 ~ 6418798 (+)
G139827 NA non-coding downstream 573639 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 618726 7998213 ~ 7999259 (+)
G139836 NA non-coding downstream 623315 8002802 ~ 8003057 (+)
G139837 NA non-coding downstream 623828 8003315 ~ 8003645 (+)
G139838 NA non-coding downstream 624417 8003904 ~ 8005450 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other upstream 303149 7066855 ~ 7073538 (+)
G139492 NA other upstream 1223567 6147748 ~ 6153120 (+)
G139176 NA other upstream 2277943 5096731 ~ 5098744 (+)
G138941 NA other upstream 3346763 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 3780579 3428689 ~ 3596108 (+)
AMCG00002960 NA other downstream 529765 7909252 ~ 7920908 (+)
G139784 NA other downstream 543695 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 658090 8037577 ~ 8044413 (+)
AMCG00002982 NA other downstream 1113518 8493005 ~ 8496965 (+)
AMCG00002996 NA other downstream 1857253 9236740 ~ 9244099 (+)

Expression


Co-expression Network