G139492


Basic Information

Item Value
gene id G139492
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6147748 ~ 6153120 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175429
TGATTCACTGGGGAATCCGAAgtgttgcttcaactgaagcattgtaccttaacaaaTGGGGGCTCGTCTGGGATACAATCAGgTAAAAGCTGCTCAGACTGAACCAGCCCAGCAGGACTGTCACCCATTCCAACCAGGTGACTGTGTACATCAAAGCACACAAGAGAAAGTCCTCCCTGCAGCCCAGGTGGACAGGGCCCTACCAGGTGCTGCTGACCACCCACGCAGCTGTGAAGTGCCAAAGGGAAACAACACTGGTGGAGACCAGAGGGATGCTCTCCTTTactcctggatcctcttccTCGCTGCCTGCAGGACCATCGTCTGCACCATAACAGCCAAAGGACGTCTTCAGTGCCCAGCCAATGGGATCATCGCGGACTGAGGAAATCAGTCCAGAAGCAGCtgacatcatcatcaacctCTAGATAACGAGGCCAGCGCAGGGCCAGAGCAGTGGCCCACAAGGAGTAGCCGTACGCACGAGTCCACAAATACCGGGTGATGTGCTAGTAACCTCTCCCCTTCCACATATTGACATCACAGACACTAACACTTACACTGATCAAACACAACTGAGGATTCGACAGGGACAACAAAGCCACCTGACCAGAAGAAACACCTACAACCCCAATCGAGGAACAGTGCTGAATCCTGATGATGGCCGAGGTCGACCTTACCCTTCTGATCATTGCCCTGACGGCTCTACTGGAGCGATCCAGCTCAATTGAATGCCAACAATTCAACCACTGTCCCACGGTGGGACACAAATAACAGCTGCTCCACCTCCCTGAAGAGAGAACAAAAGCCTTGCTTGCTGCATTCAAGAAATGCATGGTGGACGATATGTAACTTCACTGCTAGACAATGTACTAATGAATCATGTTATATATGCACTGCTATTCAGATGGTCTTTATATTGCCTTAATTGACAGTGAGAACCATGGACGGCCTCCTAAAAGGCCAGATCATACGAAAAGACACAAGAGGGCTTCGTTTGACACATCAGTATATGCCATACCTGAAGAACATCGCCTCACATATAGGGCCAGGAGATTCTGGACCTCTGTCTTATCTTCCTTTGGCACTGTGCAGCAATGGCACAttattgaacatttacattatagaTTAGCGCAATTTACAATGACACAATAACAGCTCTTGAAGCTATTAACACTAAAATAACAGTCACATGCCTCATGAAAACTCAGAATTGCTTGATCTTAGATGTGCCCCTTGCTAAGGAAGGAGGTGTGTGCCATATTGTTGGGGATCACTGTGTTTACAGAATCTGATCAAGAGGGCTTACTTTGTGATTAACATGtccaaaatgtctttttatatcTAATGGTTGAAACAACTTTTCGCAATTTTACGaaattaatgtaacatgttcatgtttcatTAAAGAGGGCAACTGTTGGGGTACAATTGTtttccagtaagatactagttaaaacttgctcttataagggtttctttgttcttatttctctgctcagacttatctgtgtggcagattgAGATAGTTTACTGCCGTAAACATTCCTTACGTAAcgaactgaaaatatatatatatatcacattctaatcagtacagtgtgtgctgtgtccttggtaccagtgcctccatgtctggatgaaatattgttttcccgattataaagaataccttatcaattatttcttcccgtgtctcggaactgacccgggacatatgccaagaaaatatcattcAGGTTCGGGACTGCCccgaacctcctttgaaatgttgcttgtagatgtataaaaggctgtgtgaaactttcaataaacgaagataaatgaacagacattgtgtcagtgactttacttcccgggcctgtctcctgttgaaaagcctcatctgttactggaagcgctcactgggatgcctgattcactggggaaTCCGAAgtgttgcttcaactgaagcattgtaccttaacacctgcagacac

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU175429 True 1979 TUCP 0.45 2 6147748 6153120

Neighbor

gene id symbol gene type direction distance location
AMCG00002910 NA coding upstream 15529 6117729 ~ 6132219 (+)
AMCG00002908 LOC107553481,LOC107753437,LOC107669213,LOC107683711,LOC108413682,LOC107715956,LOC105902286 coding upstream 37236 6094105 ~ 6110512 (+)
AMCG00002911 NA coding upstream 55682 6086560 ~ 6092066 (+)
AMCG00002904 NA coding upstream 108840 6020258 ~ 6038908 (+)
AMCG00002903 NA coding upstream 131503 6011828 ~ 6016245 (+)
AMCG00002909 NA coding downstream 4653 6157773 ~ 6158567 (+)
AMCG00002916 acta2,LOC106531354,LOC107683715 coding downstream 36244 6189364 ~ 6193500 (+)
AMCG00002917 NA coding downstream 56608 6209728 ~ 6212571 (+)
AMCG00002918 NA coding downstream 75067 6228187 ~ 6234155 (+)
AMCG00002915 NA coding downstream 102050 6255170 ~ 6266600 (+)
G139488 NA non-coding upstream 7077 6138121 ~ 6140671 (+)
G139351 NA non-coding upstream 328623 5818052 ~ 5819125 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 705469 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 781065 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 908258 5239350 ~ 5239490 (+)
G139498 NA non-coding downstream 41491 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 45150 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 46239 6199359 ~ 6199856 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding downstream 48083 6201203 ~ 6201470 (+)
G139507 NA non-coding downstream 49724 6202844 ~ 6203059 (+)
G139176 NA other upstream 1049004 5096731 ~ 5098744 (+)
G138941 NA other upstream 2117824 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2551640 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3031667 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 3653154 2492086 ~ 2494594 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 913735 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1223567 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1756132 7909252 ~ 7920908 (+)
G139784 NA other downstream 1770062 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1884457 8037577 ~ 8044413 (+)

Expression


Co-expression Network