G139263 (cdk1,LOC106607826,LOC100136692)


Basic Information

Item Value
gene id G139263
gene name cdk1,LOC106607826,LOC100136692
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5439777 ~ 5442279 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175151
CATGAGTGTAAACTCGCACTGGGATCCCAAAAGCTCTTGCCAGCCCAAAGTCAGCAAGCTTTATTACTCCTTTGCTGTCAATCAGCAGGTTCTGTGGCTTCAGATCACGGTGAAGTACTCTGCGACAGTGGCAGAAGAGGATGCCCTGCAAAATCTGGTATAAATAGCTCTGGAAGACAAAAACATCCACTTTAACATTACACGTATAACCAAAGTGAAACGAACATTTCAGATCCAGCGcccacacattacacacacaactGGCTTGAGTTGTACTGTACCTTTACAAGCATGGGCTCCATATACTGGCCAGAAGGTATTGAATCCAGGTATTTCTTCAGGTCCATAGAGAGAAACTCAAAGATGAGGTAGAGCCTGGAGTCCTGCATCAGCACGTCCAGAAGACGGACCACGTTGGGGTGCTGCAGCTCTCTCAGCAGGGAGATCTCCCTCACCGCCGTGCTGGGCACCCCCTCCTCCTCGCTCTCCAGCCGGATCTTCTTCATGGCCACCACCTGACCCGTGGACTTCTGCCGACCTTTGTACACAACCCCATAGGTACCCTCTCCAATTTTCTCAATCTTCACATAATCATCCATGGTTgtatcctaaaaaaaaaaaaaaaaaaaaacacaaaataacaggaAGACATTTACTGAAGAGGTGCAGTGGTGAACACTCAAGGTGAATAGATTAATTGTGCGCGATACAATTTGAACCATTTACAACCATCATATTGATAGTTACTTATTGCTCTGCAGGGCAAAAGGGACAATCTATCCTTAACGTTTGAGAAAAATGTCCTTTCCACGCCTGAGATTTTCAGTCACTTTGCAAAACACTCACATATACAGAATCAATCTCAGCAAgcctaaaaaaaacacacacacacatatatatatatatatatatatatatatccacacacacattttccataaaCCACCCTATtgtgcagtaaaatacaaatgcaagtTAAAATTTTACTGGTAGTGGCCGAGGCTTTAATTTTTTAGGATTAATATTAAGCTTCTTGCTtatccatggcgacttacaaagtataacattatatatatatatatatatatataaataaatctgtgttaGATGCAAGTTAAATACGTTGCTTTTTTCCTCTAAATGAGGGATGGCTTATTGTGTTCAGTCGACTTcctacattaaaatacatctgaTTGTGCAACGTAAACCACAACTAACAGCTCATCTTCCTCTCATTATCTATAGGATGCTTGTGCAGCAGTAACACCTCAGTGATTTAGGCAGCAGGACAGGCTATAATAAGTGAATAAGACGGGATTTCTCTTCGTTAACACACTCACGGTGTGTTAATATTGTAACAccgcagacacagggccagttTTGACAGCTGCCCtcataaacacatacactcatactcctatatatgcatattttatagttttggGCCATTTTACCCGGTGTGCAAATACACTGTCTCACTAacacgtttttgtttgttttgcatacGTTGAATATATGTTAATTGAAACAGTAAAGTAgattatgtgtatgtgtatatatatatatatatatatatatatatatatggacagcAGTATAGGTCGAGGCTCTTAGGCCTTCCCTTCCACCCGCCGGCTTTCAACACAACATCCGGGTAACCTCGCCCAGACACCCGACAGTAAGTCAGTTTTATTATACACATTAAAACCGGAGTTAAATTAGATATTTCACAGAATTGAAATTCAAAGTGTATAAAACCTTGGAATGTGATTATAATCGACTTGACTAGAAACCCATATTTCTAGTAGTCGTGCGGTTCTAAAATGGACACAAAAACCATCAATTGTTcgaaaatataaatgaaaacatcgTCATCTGCAATTTACACAAATGCTAAACAATTATATAGATTAATAGAGCGataaagtgaataaataccCTGTCCCAAAGCTGCACCTCCTGGCTCGTCCTGGTCGTTGCGGGGAATGGGCTGCCTGCGCTTTCAAACCGGCCGCGCCGCTGCCTTTCAAATCCAGCCAATCAGGGCCGCTCGCTTACTTTCAAAAGAGCCAATCAGGAGGCGG

Function

symbol description
cdk1 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Acts upstream of or within regulation of mitotic cell cycle, embryonic. Predicted to be active in nucleus. Is expressed in eye. Human ortholog(s) of this gene implicated in breast cancer; cervical cancer; and urinary bladder cancer. Orthologous to human CDK1 (cyclin dependent kinase 1).

NR:

description
PREDICTED: cyclin-dependent kinase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175151 True 2084 lncRNA 0.41 3 5439777 5442279

Neighbor

gene id symbol gene type direction distance location
AMCG00002880 rhobtb1,LOC107654062,LOC106604002 coding upstream 3863 5418675 ~ 5435914 (+)
AMCG00002882 NA coding upstream 53348 5383852 ~ 5386429 (+)
AMCG00002881 NA coding upstream 56084 5380613 ~ 5383693 (+)
AMCG00002872 NA coding upstream 154705 5276915 ~ 5285072 (+)
AMCG00002871 egr2,LOC107596614,LOC107596611,LOC107739063,LOC107745678,LOC107653961,LOC107593522 coding upstream 205950 5231982 ~ 5233827 (+)
AMCG00002888 ank3,LOC107746453,LOC102308332 coding downstream 95211 5537490 ~ 5616805 (+)
AMCG00002884 ccdc6 coding downstream 176948 5619227 ~ 5638109 (+)
AMCG00002885 NA coding downstream 201096 5643375 ~ 5651423 (+)
AMCG00002889 NA coding downstream 211523 5653802 ~ 5655220 (+)
AMCG00002886 NA coding downstream 216158 5658437 ~ 5665972 (+)
G139238 NA non-coding upstream 73094 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 200287 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 370882 5067472 ~ 5068895 (+)
G139084 cpeb3 non-coding upstream 637533 4798613 ~ 4802244 (+)
G139044 NA non-coding upstream 726952 4626657 ~ 4712825 (+)
G139351 NA non-coding downstream 375773 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 695842 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 752332 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 755991 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 757080 6199359 ~ 6199856 (+)
G139176 NA other upstream 341033 5096731 ~ 5098744 (+)
G138941 NA other upstream 1409853 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1843669 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 2323696 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2945183 2492086 ~ 2494594 (+)
G139492 NA other downstream 705469 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1624576 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1934408 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2466973 7909252 ~ 7920908 (+)
G139784 NA other downstream 2480903 7923182 ~ 7926832 (+)

Expression


Co-expression Network