G139170


Basic Information

Item Value
gene id G139170
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5067472 ~ 5068895 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175041
TTTATACTCATgccagtttatttgtatttattcgcATGTTACAAAGACAGCAACCATTTTAGTTTGTATTCCACACAAATTGAAAGCTCTTCCTtgtaacaaaggaaaaaaacaaagccaacTTTGGTTACCCCAGCTTTTAATTTATGGTTCCCTACAAGGGCAGGGTACATTCCACACTGAGATGACTAGCTTCAAGATACAGCAtttgaagaaggaaaacaagTGGACTGTGCAAAACATGTTCCAAAAATCCTTTGATCAGCCAGTTGACACACGTGAAAGATTAAAGACAGGACGACAAACTGGAGAGTTCAGTTTCTCCCACCTAATAAACTTAATGCAGGGctcatatttgaaataaaatgcgAGGTTCCGATTGTTTGACTTAATTAGGATTAGTTCATCAAAACAGGAACCCCTTTGTACTTTTTTTGCTTCGTGCAGAAATGGTTATAAATGTATGAGAACACTCACAACTCAAATCGATAGATGCACCGatagattaaaaaaaggtttaaattagTACTTGACGCTGCCAGACACTTAAAAAGTTACAATGAACTTCTTCATACATAGAAAAGATGAAagtaaaagtttaattttaaaacaaatactggaAAAATCAGGCAgtctattattaatataactcAATCaggacatttaaaattgaaccacaaaaacacaaatgtaaacattcTGCACTTTGTACAAATGTACTTGCTTATACCAACTTGAAAAGTTCATAAATACCATGATTTAGAGATACAATTACAGATttgctttcaaataaacatgattttttttttttttttttggtatttcattaaaaattaagaaatttcagttttcaaaaaaACAGGACCCTTCACcatttcaaacaaagaaaatatttacagactTCTCCATGGAAGTACACATTTACATCAGTAGTCAGGTCCTTTATTCAGTCAGAGTGTTGAATGTACTTTTATACGCCGTAGTTCACAGAACTAATTCCTGGTCGTCGTTTTCCTTTAATCTTCAGGGATCCATAACGATTCTTTTCTTAATTCGCGATCTCGTAATTTTCACACTCTGAGAGCGACGCAGTCCCCGCTGCGCCAAAGCCTCGTCCTCGGACAAAGTGCCCTCAAAGTCGTCGTCGGTCCGGTCCTCCGGGTCATCCTGCTCATACTGATAGGCATAACCTGCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175041 True 1198 lncRNA 0.36 2 5067472 5068895

Neighbor

gene id symbol gene type direction distance location
AMCG00002867 LOC108412396,LOC103044660,LOC104928862,LOC105891210 coding upstream 42889 5012179 ~ 5024583 (+)
AMCG00002866 exoc6,LOC107695547,LOC107654070 coding upstream 58727 4963957 ~ 5008745 (+)
AMCG00002864 NA coding upstream 115067 4952100 ~ 4952405 (+)
AMCG00002862 NA coding upstream 134267 4928430 ~ 4933205 (+)
AMCG00002863 LOC104965006 coding upstream 148951 4908501 ~ 4918521 (+)
AMCG00002868 jmjd1c,LOC108412835 coding downstream 84409 5153304 ~ 5187446 (+)
AMCG00002871 egr2,LOC107596614,LOC107596611,LOC107739063,LOC107745678,LOC107653961,LOC107593522 coding downstream 163087 5231982 ~ 5233827 (+)
AMCG00002872 NA coding downstream 208020 5276915 ~ 5285072 (+)
AMCG00002881 NA coding downstream 311718 5380613 ~ 5383693 (+)
AMCG00002882 NA coding downstream 314957 5383852 ~ 5386429 (+)
G139084 cpeb3 non-coding upstream 265228 4798613 ~ 4802244 (+)
G139044 NA non-coding upstream 354647 4626657 ~ 4712825 (+)
G139038 NA non-coding upstream 483305 4583865 ~ 4584167 (+)
G138946 NA non-coding upstream 990684 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 1042727 4024442 ~ 4024745 (+)
G139205 NA non-coding downstream 170455 5239350 ~ 5239490 (+)
G139238 NA non-coding downstream 297540 5366435 ~ 5366683 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 370882 5439777 ~ 5442279 (+)
G139351 NA non-coding downstream 749157 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 1069226 6138121 ~ 6140671 (+)
G138941 NA other upstream 1037548 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1471364 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1951391 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2572878 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3657384 1406611 ~ 1410088 (+)
G139176 NA other downstream 27836 5096731 ~ 5098744 (+)
G139492 NA other downstream 1078853 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1997960 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2307792 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2840357 7909252 ~ 7920908 (+)

Expression


Co-expression Network