G139084 (cpeb3)


Basic Information

Item Value
gene id G139084
gene name cpeb3
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4798613 ~ 4802244 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174942
TCTCAGTACAAAGGCTACATTACTATTGAAAAATACTAGCATGAAGATTAGGTAAATACACAGTAGAAAATGATCTTCGTGAATCACAAtgtttgcaatgaaaataaatctgcaataAAGATttatgccttttttctttttctatttttttttatatacaaacagtACAAACAGTATTGCACATTACAACAAAGAATCGAGGTTGTTAGCCTTCAAAAAAATCTGACTAATTCAAGTCTTACATGAAAGGAAGGCCACCAATGACCTGATGCACCGAGGGGCTTTCAATcaagttacagtttaaacactttgaatttaaaaaaataacattctgtttcttcttcttcttcttcttcttcgcaAAGGACTCGCCGAAGTCTTTAATAACATCAAGTAAACAAATCAGGGCGtgttaatttacaaaacaaaagggaGCACATACTTTTaggaaacataaaaaagttctcttaaaaaaataacatgaacagAAGATTTCTTTCACAACTCTGGTCAGCGTagtaaatgattaattataaatatacaaaaacaaggGAAACATCTTCCATTAATCCTCTCAGCACCAAATTTGactattttaattatgtgatttttttcattcaaaagaATCATGATTAACTGATTTCTACCCttgaataatatttaatatttcacaattcCACGGAAGGTAGATGTGGGGAATTTCTTTACCCATGTCTTCTCCTCTGTAATAAGGTAGACTCTGTACTTTTGCTaactacattatattaaagTTATAAAGCTCTAGctccttcagtttttttttccaaaataaaaagcaaacaagcatgaaaaaaataaaattaaccatctgttaaatcattttcttacagaattaaattaatatatatcttTTATTCTGAATAAACTCACTTAGAAAATATCAATTTCTCTCCTATATTTCAAAATTGAGGTATTGCAAAACATCATGTCAGTCAGAAAGCACGCTTTTatcgtttatttttttctcttaaaaaataaaataaaaaataaaatgaaataaaaaaagctgaCTGTTGAAAACTGTCCAGATACAAAAAGTAGTGCATAACAAATGTCTTTTACagataatgaaaaaacataGAAAACCCTTCTGGGCAGGAAAGCAATATCACAAAAAAGCCCAGAATTAACCTCGAAAGGGATACTAATCATTAtaagccatgtttttttttgttttttttttgtttcattgttagttttttttcttttaatcagtaaaaaaagtaatttgttttctttttttttgccccccccagaaacaaaaacaaaaagtccatCCTAAAGCCAATACTCGcaactaaacaaagaaaaagactcAACTGGACGAAAACAGGacttcacaaaacacaaagggACGCACGACAAACACGTCTACTAATGCGCTGTTATATCCTGTTGGATTGTCCCCCCAAAACtgctaaaaacaaatgtccacTACTTTAGCAGGTCAGAATTATACTTCAAGCTTCGCAGGATACATCCAGGGTGTAGGGAGCTCAGTTTTCCAGATCAGACACCTCCATTTTGACAATTGTGCAGACAATTCTTTAgcgtttgttgttttgttgttgtcgttgtgtgttttcttcttctacCGATTACCCACGAGATGTGCCTATTTCATCTGCCTGCCAAACAAATCTATTGAGAGCCTGACAAATATATGAAGTTGTAATGGTTCTgtgttgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgccaATACACCGGTTATGAAGCTTCACAAAACTTCTATGTCAGACATCAACAACAGTTAAAGCGAATCACAGTACTAGGCGTAATCACcctactatatatacaaaaattgcacaattatatattaaagatcacTGCAAAATTACTTCACCTACCATAGACAATTGTTTTAAGGATATCCTACATCTAATTCATTTATGATAAACTCTTGTGTTACTTGTTAATGCTTTAACGGACACAGTTTCTAGTTGCAGAAGCATTTTAACTGAGGCATGCCTATCTTACGGTAATCAGCCAATTCGGTATACGTTTGATTCCCCGTTGTAGTTGTTTTATATCGTAGtctacatatattatttatcacTTTGTGCAATGTGGGCAAAATTATATAATAGACATGGTATAGAAATTCTATTGCATGCAGCAAcctgatttaaataaacatgcagtGAGAAATCTACCCACTTCAAAAGGAACTCGCCTCCATGCTAGTCTACTCTCTCCAGCAGCAATTGAGCTTCATTTCATTGTATTCGTCTTTTAAATGTTCACCCTAGCCTGAATAAAGTACTATGGTATTAGGAAATACCACGTATTTAGCAGCAAAAGCTATTGcagcatacatttacataacactaaaaataaaaatccaactaaacaaaataaaagcaacataaaaTAGAATCAGATTGAGCTTATgaggtattatttttttccaagtcAAAATGGAGAGCAAATAAAGGCTTGTTATTCTaagtaggtttttttttctttttctttaattcacCCAGATTAATGTGTGTTAAGTTTTGCTACATCATGTGCCAcctatgtttgttgttttttttgtaatttttttttacctttggTAATTTTTACTAGGGGCAATGTCCtaccatttctgaaaataagtgCATGCTCCagtcacataaaataaaataatctatatatagatagatacaaaacaaaaaaatatataattttaatatatatcgTATCACTTCAGCAACAGCCAGGTATTTTGGCTGACCAGGAATAGCAGACTACCAAAATCTATGGAACAAGTGActtagaaaaatgaaaattcagGTACCAAGCAAGATATtatttcatgtgtgtttgtgttgtttttttgtgccaAAGTGCAAATTCTTTACagttaaacttatttttttttcccatttcagTTATAGAAATACCAGACAATGAGTTcaaaacagtaaattaaattaaattaaaaaaagacccattttgttttctctttttatctCCGAATCTGAGGAAGAATGCACCGATCTCCAGGAGGCGCCCCGGCCCGTGTCGGCATTGCCGGGCCGCCGCGCTCGGTCCGCTGGGCTTGCcgtcggggtgggggggcgctGGTGGGCGGAGGCTTCAGCTCCAGCGGAAGGAGACGTGGCGCGGCCGGTCGCCCCCCTCCTTCACCAGCGGCTTGTGGAACTCCCTGCCGGCGCGCGAGTGGATGCTGGCCCAGCAGTACTCACAGTAATACTGCAGACATGTCACGTTGGCACAGAAGAACGGGGCGAACTTGCCGCCGCAGCGCGCCCCCTGGCACTCGTCACACATCTGGTCATCCAGGACGTATGG

Function

symbol description
cpeb3 Predicted to enable mRNA 3'-UTR binding activity; ribosome binding activity; and translation regulator activity, nucleic acid binding. Predicted to be involved in negative regulation of cytoplasmic translation. Predicted to act upstream of or within regulation of translation. Predicted to be part of messenger ribonucleoprotein complex. Predicted to be active in several cellular components, including neuron projection; nucleus; and synapse. Orthologous to human CPEB3 (cytoplasmic polyadenylation element binding protein 3).

NR:

description
PREDICTED: cytoplasmic polyadenylation element-binding protein 3 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174942 True 3381 lncRNA 0.36 3 4798613 4802244

Neighbor

gene id symbol gene type direction distance location
AMCG00002858 btaf1,LOC107679172,LOC106604898 coding upstream 2309 4775371 ~ 4796304 (+)
AMCG00002852 LOC107562385,LOC104957417 coding upstream 30937 4763141 ~ 4767676 (+)
AMCG00002853 NA coding upstream 50472 4734674 ~ 4748141 (+)
AMCG00002849 NA coding upstream 224447 4568555 ~ 4574166 (+)
AMCG00002847 LOC104962727 coding upstream 234072 4533786 ~ 4564541 (+)
AMCG00002861 march5,LOC107549154 coding downstream 48546 4850790 ~ 4867571 (+)
AMCG00002857 march5,LOC107586100,LOC107549154,LOC107676368 coding downstream 72639 4874883 ~ 4877336 (+)
AMCG00002863 LOC104965006 coding downstream 106257 4908501 ~ 4918521 (+)
AMCG00002862 NA coding downstream 126186 4928430 ~ 4933205 (+)
AMCG00002864 NA coding downstream 149856 4952100 ~ 4952405 (+)
G139044 NA non-coding upstream 85788 4626657 ~ 4712825 (+)
G139038 NA non-coding upstream 214446 4583865 ~ 4584167 (+)
G138946 NA non-coding upstream 721825 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 773868 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 808265 3989924 ~ 3990348 (+)
G139170 NA non-coding downstream 265228 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 437106 5239350 ~ 5239490 (+)
G139238 NA non-coding downstream 564191 5366435 ~ 5366683 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 637533 5439777 ~ 5442279 (+)
G139351 NA non-coding downstream 1015808 5818052 ~ 5819125 (+)
G138941 NA other upstream 768689 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1202505 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1682532 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2304019 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3388525 1406611 ~ 1410088 (+)
G139176 NA other downstream 294487 5096731 ~ 5098744 (+)
G139492 NA other downstream 1345504 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2264611 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2574443 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3107008 7909252 ~ 7920908 (+)

Expression


Co-expression Network