G138927


Basic Information

Item Value
gene id G138927
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3989924 ~ 3990348 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174744
gTAGTggtctaatttattttccagagctgtatataccgCATATTTTGGCGAACGTTGCACGCCATCCGGGTACTTTTACCATACTACACATTCATATGCTACTTGCAATACGCATACTGCACACTACTGACATGGTGGCATGTCATACGTGTAGTACGCGGTTTCGCGTGCAGCCACAGCGACAAATCCGTGACTTCACGTAGATGACGTAACCGGTCACGCATCCACAGCTTCAACGAGCGCTGCGCGACAAACAGGGGCGGCGGCCCCAGACAGCCCTCCTGCCTGCACCGCCACCTAGCCAGGGGGTGTGGATCGCCTGCGAGTCATGGCATGGAGGAGCGTATGCGTTTCATATGGCGAAGTACATCAGAGATATTTTAAAGTTGacagttcaacaataaaatgaTATGCCTGTTATAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174744 True 425 lncRNA 0.50 1 3989924 3990348

Neighbor

gene id symbol gene type direction distance location
AMCG00002827 NA coding upstream 15605 3971112 ~ 3974319 (+)
AMCG00002826 NA coding upstream 278607 3711012 ~ 3711317 (+)
AMCG00002825 grid1b,grid1 coding upstream 282246 3699569 ~ 3707678 (+)
AMCG00002823 LOC105909129 coding upstream 308632 3677642 ~ 3681292 (+)
AMCG00002822 grid1b,grid1,LOC102791605,LOC107598047,LOC107563625 coding upstream 427775 3561352 ~ 3562149 (+)
AMCG00002834 NA coding downstream 9942 4000290 ~ 4006473 (+)
AMCG00002833 NA coding downstream 26332 4016680 ~ 4022394 (+)
AMCG00002835 LOC108269590,LOC107750875,LOC107583634,LOC107668614 coding downstream 41020 4031368 ~ 4033632 (+)
AMCG00002839 NA coding downstream 47362 4037710 ~ 4041401 (+)
AMCG00002831 NA coding downstream 53245 4043593 ~ 4052584 (+)
G138905 NA non-coding upstream 61270 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 262193 3727497 ~ 3727731 (+)
G138871 NA non-coding upstream 611897 3376246 ~ 3378027 (+)
G138816 NA non-coding upstream 812314 3172907 ~ 3177610 (+)
G138719 NA non-coding upstream 1298084 2691429 ~ 2691840 (+)
G138940 NA non-coding downstream 34094 4024442 ~ 4024745 (+)
G138946 NA non-coding downstream 81933 4072281 ~ 4076788 (+)
G139038 NA non-coding downstream 593517 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 636309 4626657 ~ 4712825 (+)
G139084 cpeb3 non-coding downstream 808265 4798613 ~ 4802244 (+)
G138888 grid1,LOC106607602 other upstream 393816 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 873843 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 1495330 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 2579836 1406611 ~ 1410088 (+)
G138506 NA other upstream 2587495 1401289 ~ 1402429 (+)
G138941 NA other downstream 39176 4029524 ~ 4029924 (+)
G139176 NA other downstream 1106383 5096731 ~ 5098744 (+)
G139492 NA other downstream 2157400 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 3076507 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 3386339 7376687 ~ 7379487 (+)

Expression


Co-expression Network