AMCG00002834


Basic Information

Item Value
gene id AMCG00002834
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4000290 ~ 4006473 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002834
atgTTTCCTGACAGCAGTGTGCTCTTCCAGCCCAGTGCCATGGGTCTCCTGCAGCGCTGTGAGGAGCTCTTCAGCTCGGCCGACCTGTACCAGGTGCTAGGAGTGACCAGGGAGGCGTCCGAGGCCAAGGTCCGCCACGGATACTTCAAGGTCTCTCTGCTGCCCAGTGCCATGGGTCTCCTGCAGCGCTGTGAGGAGCTCTTCAGCTCGGCCGACCTGTACCAGGTGCTAGGAGTGACCAGGGAGGCGTCCAAGGCCGAGATCCGGCGTGGATACTACAAGGTCTCTCTGCTGGGCACAGTGGACGAGGAAGCAGATGCCCTGAGCCAGGAGCGCTGCTGGGACGAGTACTGGAGGCTGCTGTTCCCCAAGATCACGCTGGCGGACATCCTGCAGTTTGAGAAGACCTACAAGCACTCTGCGGAGGAGCAGGCCGACGTGCTGCAGCTGTACACGCAGGCCGAAGGGGACATGGACCACATCATGACCTCGCTGCTGTGCGCTGGGCCGGAGGACGAGCCACGCGTCCGCGACATCATCCAGAGCGCCATCGATGCCGGGGAGGTGCCGGCCCACCGCGCCTTCGTCCAGGAGAGCGACCGCAAGAAGAAGGCACGCAAGAGAGTGGCTGACAAAGAGCGCAAGGAGGCGGAGAAGGTCCAGAAGGAGATGGGGCTGCAGGACGGCGAGGACAGCCTGGTGGCCATGCTGCAGAAGAGGCAGAAATCCCGGGAGCAGGGCTTCAACTCCTTCCTGGCGAACCTGGAGGAGAAGTACTCCAAGAAAGGAGGGAAGGGGGGCGCTGCGAAGAAGGGCAAGAAGTGAGGACACCGGAGCCGGGCTGTTGATATTGTAGGACTCCTGCGCTCACTGGTGCTCGTCAGCGCGGGGCTGGAACACTGAATAACTTTTAAACACACTTGGGGAGATCTGTTAAGAGTCTTCAAgtttttctctccctcactcactctctccctgtctgtcagattcaaattcaaggtgctttattggcacgCCAGACGGGtttgcagtgttgccaaagccaTTAGCCTTACGCGTGTatggaaaaagaagagaaataataataaataaaagtcagtgtttttataaaatacaaaaaccacaacacagaaaaaagtttaaatgtaatcttaatatagacatttttttttttatcaaacaaGGAAGAACAAGAGAATACATCCCAGTAACAGGGTCTACAGACTCGTGAACAGCGTCACATTGTGTCCCCCATGAGGATTGACAGTTTTCTTCTGTTATTCATTACCCAAAATTGTTTga

Function

GO: NA

KEGG:

id description
K09529 DNAJC9; DnaJ homolog subfamily C member 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002834 True 1302 mRNA 0.55 6 4000290 4006473

Neighbor

gene id symbol gene type direction distance location
AMCG00002827 NA coding upstream 25971 3971112 ~ 3974319 (+)
AMCG00002826 NA coding upstream 288973 3711012 ~ 3711317 (+)
AMCG00002825 grid1b,grid1 coding upstream 292612 3699569 ~ 3707678 (+)
AMCG00002823 LOC105909129 coding upstream 318998 3677642 ~ 3681292 (+)
AMCG00002822 grid1b,grid1,LOC102791605,LOC107598047,LOC107563625 coding upstream 438141 3561352 ~ 3562149 (+)
AMCG00002833 NA coding downstream 10207 4016680 ~ 4022394 (+)
AMCG00002835 LOC108269590,LOC107750875,LOC107583634,LOC107668614 coding downstream 24895 4031368 ~ 4033632 (+)
AMCG00002839 NA coding downstream 31237 4037710 ~ 4041401 (+)
AMCG00002831 NA coding downstream 37120 4043593 ~ 4052584 (+)
AMCG00002832 NA coding downstream 49966 4056439 ~ 4071275 (+)
G138927 NA non-coding upstream 9942 3989924 ~ 3990348 (+)
G138905 NA non-coding upstream 71636 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 272559 3727497 ~ 3727731 (+)
G138871 NA non-coding upstream 622263 3376246 ~ 3378027 (+)
G138816 NA non-coding upstream 822680 3172907 ~ 3177610 (+)
G138940 NA non-coding downstream 17969 4024442 ~ 4024745 (+)
G138946 NA non-coding downstream 65808 4072281 ~ 4076788 (+)
G139038 NA non-coding downstream 577392 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 620184 4626657 ~ 4712825 (+)
G139084 cpeb3 non-coding downstream 792140 4798613 ~ 4802244 (+)
G138888 grid1,LOC106607602 other upstream 404182 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 884209 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 1505696 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 2590202 1406611 ~ 1410088 (+)
G138506 NA other upstream 2597861 1401289 ~ 1402429 (+)
G138941 NA other downstream 23051 4029524 ~ 4029924 (+)
G139176 NA other downstream 1090258 5096731 ~ 5098744 (+)
G139492 NA other downstream 2141275 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 3060382 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 3370214 7376687 ~ 7379487 (+)

Expression


Co-expression Network