AMCG00002839


Basic Information

Item Value
gene id AMCG00002839
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4037710 ~ 4041401 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002839
ATGACCTCACCCCCATCTCTCTATCTCCACCTGACTGTCCAGCGGCGGTACTTCCCCACCGATGAGGACCAGACGGGTGCTGCCAAGGCACTGCTCCGGCTGCAGGACACATACCAGCTGGACATGCACACACTGTCCACGGGGGACCTGCCTGGGGGAGCTGGAGAGGGCACTGGAGCTCACCAAAAGGCTGCTGAGGCTGGcGAATCCGCACACATCCACACAATGCAGGTCCGCCTGGGAGAACCGCAGGGCTCAGCGCAGGAGGAGCAGGCAAGAAATGGAGGCCGTGAGTTTAATCTGGCCGTGTGGAACAAtcctgtgctgttgtgtgtcattTGTGAAGCGGCTCAGCGGACGCTGGAAAGTGATGCTCCTCCGCGGCGTCGCTTCACCGCCTTCACAGGAGAGACATTGGCGCCAGACTGA

Function

GO:

id name namespace
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0043167 ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002839 True 429 mRNA 0.61 4 4037710 4041401

Neighbor

gene id symbol gene type direction distance location
AMCG00002835 LOC108269590,LOC107750875,LOC107583634,LOC107668614 coding upstream 4078 4031368 ~ 4033632 (+)
AMCG00002833 NA coding upstream 15316 4016680 ~ 4022394 (+)
AMCG00002834 NA coding upstream 31237 4000290 ~ 4006473 (+)
AMCG00002827 NA coding upstream 63391 3971112 ~ 3974319 (+)
AMCG00002826 NA coding upstream 326393 3711012 ~ 3711317 (+)
AMCG00002831 NA coding downstream 2192 4043593 ~ 4052584 (+)
AMCG00002832 NA coding downstream 15038 4056439 ~ 4071275 (+)
AMCG00002840 inpp5a,LOC106605012 coding downstream 121125 4162526 ~ 4186873 (+)
AMCG00002842 valopa,LOC107570927 coding downstream 212358 4253759 ~ 4267239 (+)
AMCG00002846 NA coding downstream 349953 4391354 ~ 4399257 (+)
G138940 NA non-coding upstream 12965 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 47362 3989924 ~ 3990348 (+)
G138905 NA non-coding upstream 109056 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 309979 3727497 ~ 3727731 (+)
G138871 NA non-coding upstream 659683 3376246 ~ 3378027 (+)
G138946 NA non-coding downstream 30880 4072281 ~ 4076788 (+)
G139038 NA non-coding downstream 542464 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 585256 4626657 ~ 4712825 (+)
G139084 cpeb3 non-coding downstream 757212 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 1026071 5067472 ~ 5068895 (+)
G138941 NA other upstream 7786 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 441602 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 921629 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 1543116 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 2627622 1406611 ~ 1410088 (+)
G139176 NA other downstream 1055330 5096731 ~ 5098744 (+)
G139492 NA other downstream 2106347 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 3025454 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 3335286 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3867851 7909252 ~ 7920908 (+)

Expression


Co-expression Network