G138871


Basic Information

Item Value
gene id G138871
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3376246 ~ 3378027 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174676
tttttcactgAAGTGCCTACGTGCCCTGAGTTTCTCTCATCTAGAATTCGGCAAAGGACGTTTTTACTGGCACGGTAGAAGCGCAGGAATGTCCCCCGGCGCTCGAGCCGCACGGGAAGAGCGGACCGACCCCCCGAGCCGCCTCCTGTACCAAAGTCATCTCTGCTCTCGTGTGTGCGGGTTtggtgtgtgtggttttgtttgctcATTTTACTCTCTCGAACCCAGATCCCTTTTAATAAGCTATCGTGTAATGCGGAACAAGTAGTCCAGGATCCGGCAGTGTTCACGGCAGGAGGACGGCGGGGCGATCGCCCTCGTGGCTGGGGGGGGTGCCGCTCCTGCTTCAAAGACACAGACCGATTGCCTCGGTGCCTCAGGGGGGGCAGGCTGGGTGACTGATCGCTCCGTTTTAATAGGATGGCGGTGCCGTGCGCGTGGTTCGGAAAAGATGGATGTTGGGAGCGGTCTTCTGCCGAAGAAGGTTTCAGCAGCACCGCTGAAGCCCTCGTCTCCCACCGTCCCGGTCCCAGGCGCTCGGGATGTCCTACGCCGTTCACGCGTGTAGAAGCTCTCGTCTGAAGACCGGGACGCTGTCACCGCGGAGGGACAGTTCTAGGGTTCATTCGTGGCACCGAGTGCTAACGCTGGAAACGAACGATTGTGAGACGAGGTGTGATGGATTAAACCAAATCGACCCCTCGGCGATGTTTAGATGTTAAAAATCTTTTTAAACCAATCAGCAGGactggaaaattattttaagtacGTTTTCAAATAAAGCACTTGAATTCTAAGCGAATGCTCTGCGATCAGCTCTGTCCCGCCGCCCCGGAGAGGTGGACTcccctttctttcctttctctctctttctttttcaccGACTGCCGAATCGGAGAGAGGAGCCATACGTCTTTACTGTGGTTTTCGAGCGATCTGACTACTGCATCGCCACCCGGACCGAGCTCATCCTTTCTGCaagcatttcattgttttttttaagtttgcctttGAATTAATTGAGAACCGTGATCTTGTAATTGATTGAATCCCTTGATATCCTGTCAGGAGTGCAGTAGTCAGATGCCATTCACATCTTCCTGTTGCTTAGGTGAATAGGTAGCTGTTAGCATGGTTTTTACAGTAGAGTACCGAGTCTGGAGGTAAAAACACCATTTCAAACCCAGATAAAAGCCAGTCAACTCTGGGGGGCTTTCCACAGTGACCGGACCCTGGTGTAGTGGCAAGCCAGGAATCGGCAACCCGGGGCCGAGAGGACATGGGCGCGTTTGGTTCCCTTTTCTTATCTAATGTATATTTCAGACTCGCATCATCGTCCCTGCAGCGCTTCAGCATAAACGGGGGAGTAAAAGAAGTGTTGGATCTTTCACATCCGGGCTTCAATAGAAACCCCAGTGAGCCGAGCAGCCTCTTGCATCCCGAGCAGCCGGACAGATGAGAGCCGCACCAGAGCCGTCTATATTTCTCTCATCTGTGACCAGGCGAACGCTGCGGCCTTTGCAAGAGGCTCCTCTACAAACCTGAAtatgaatggaaaacaaaagtgtaCATAGTTGTGTAAATATCGGCTATTGGAAATTAGAATGGTAGACTACTTTTCTGAATCCaatcctatttttattttatacagtatttcTCAGTTGTGTTATTTGAAGTAATAAAAGCCAACTGCAGGAAGAAAAACCAGTTTGTACCAGTTTCAAGAATAATGTCTTTGGTTACCTGTAAATAATTTTAACTCAAATAAAAATTGCTACTTTC

Function

NR:

description
PREDICTED: ribonuclease H1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174676 True 1782 lncRNA 0.49 1 3376246 3378027

Neighbor

gene id symbol gene type direction distance location
AMCG00002815 LOC107659261 coding upstream 78 3358793 ~ 3376168 (+)
AMCG00002816 LOC106607591 coding upstream 27480 3348182 ~ 3348766 (+)
AMCG00002814 NA coding upstream 109213 3257046 ~ 3267033 (+)
AMCG00002810 NA coding upstream 177745 3195140 ~ 3198501 (+)
AMCG00002804 NA coding upstream 203785 3170343 ~ 3172461 (+)
AMCG00002821 NA coding downstream 57116 3435143 ~ 3435592 (+)
AMCG00002822 grid1b,grid1,LOC102791605,LOC107598047,LOC107563625 coding downstream 183325 3561352 ~ 3562149 (+)
AMCG00002823 LOC105909129 coding downstream 299615 3677642 ~ 3681292 (+)
AMCG00002825 grid1b,grid1 coding downstream 321542 3699569 ~ 3707678 (+)
AMCG00002826 NA coding downstream 332985 3711012 ~ 3711317 (+)
G138816 NA non-coding upstream 198636 3172907 ~ 3177610 (+)
G138719 NA non-coding upstream 684406 2691429 ~ 2691840 (+)
G138712 NA non-coding upstream 708708 2665458 ~ 2667538 (+)
G138634 NA non-coding upstream 912610 2461638 ~ 2463636 (+)
G138593 NA non-coding upstream 1315642 2060377 ~ 2060604 (+)
G138903 NA non-coding downstream 349470 3727497 ~ 3727731 (+)
G138905 NA non-coding downstream 547142 3925169 ~ 3928654 (+)
G138927 NA non-coding downstream 611897 3989924 ~ 3990348 (+)
G138940 NA non-coding downstream 646415 4024442 ~ 4024745 (+)
G138946 NA non-coding downstream 694254 4072281 ~ 4076788 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 260165 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 881652 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 1966158 1406611 ~ 1410088 (+)
G138506 NA other upstream 1973817 1401289 ~ 1402429 (+)
G138476 NA other upstream 2278771 1095939 ~ 1097475 (+)
G138888 grid1,LOC106607602 other downstream 50662 3428689 ~ 3596108 (+)
G138941 NA other downstream 651497 4029524 ~ 4029924 (+)
G139176 NA other downstream 1718704 5096731 ~ 5098744 (+)
G139492 NA other downstream 2769721 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 3688828 7066855 ~ 7073538 (+)

Expression


Co-expression Network