AMCG00002832


Basic Information

Item Value
gene id AMCG00002832
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4056439 ~ 4071275 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002832
TTTCAACACGGTGCAAGCATGCTGACAGGAGTTGCTCTGGCGTGTAACTGGGCCCGCAATGGTGAAGGATTCCTCTCTTTCTTTGTGATGTCACCGCTGGCAGCACTGTTGTAATCGCCCTGGCGGAGGTGATGGCGTCATTCCGTGCCCTGGCGTAGCCTCCGTGCTCGGAGCGAGGAGGGACGCGGATCTGAGGCCGAGGCGATCGTGGCTCCCGCGGCCGGGACCGAGCAGCGCCAGCGCGGACACCGCAAGCCAGCAGACATGGAGGCTGTGGCGGAGGAGCTGCGGGCCGGCTCCCGGATTCCGGTGCTCGTCGAGCGGGTCGTGAACGACACGCTGGTGGTGACTCTCCGCTACCGGGACCGGAGCTTCACCGGGATATTGCTGGACTGCGAGAAGAAGACTGGGCTATTTTGCCTGCCAGATGTATTGACAAAGCCAGCCGAGCCTCCTCTTCCCAAACCCAGCGGAGGAGCGCCAgatgaaaaaatgtgttttgaaccTTCTCTGAAGCCTGAGCTGCAGCCATGCAACGAAAATACCCTCCTGCCCCCGGAGAATGGGCCTAGCCCTGCCCCCGACTGCGCACCAGATCCGGCTGCGTCTGCCGCGCCTGCAGGGCTGCCTCCCTTTCCTCCCTACTTTGAAGGGGCTCCTTTTCCACAGCCGCTGTGGGTCCGGCACAGCTATAACCAGTGGGTGCCCCAGCCCCCACCGAGGACaatcaaaaggaaaaagagaCGAAGCCGAGACTCCAGCCGGTTGACCATGAGCACGATCCGCCTGCGGCCCCGGCAGGTTCTCTGTGAGAAATGCAAGAACACTTTAAACAGCGATGAGGACAGCAAAGATGGGCAGCCCTCGAAAGCTGCCAAGAAGGAAAACACTGAAGTCAAGGAGCCCAAAAAGCGCGAGGAGATAGACTTTGATAGCAAAAGGTGtaaaaaggagaagaaggaggatGAGAAGTTCCCTGGGGAGATCATTCCCCACAGTCCGGTAATAAAAATCTCTTACAGTACGCCACAAGGAAAGGGGGAAGTGATAAAAATACCCTCGAGGGTGCACGGCTCAGTTAAACCATTCTGCCCAAAACAGCTGATTCAGAACGGGGTCGGGGACCACGACAAAAGCCAAGACCTTCAAGAACACAAGACGCTTCTGGACAAGTCGGGCGGTTGCTCGGCCGCATCCATTCCAAAACTCAAACTCACCAGGCCTTTGCATTCCAGTGTGGATGTCCCGTCTCCAAAAATCAGACTAAAGCCCCGAAACAGCGGGGAGGACAGTATCTCGATCTACGAGGCTGAACTCGTTGACGATCCAGAGAGACACAGCCAGCAGGTTCAGAGACCCGCTCATGCCGATATGCATTCAGAAGACTCTGCCGAGAAGAGCTCTCTCGAGATGTCCTCGGGTAGCTCCGGGGAGGAGGACGAGTTTAAGAAACAGCGCAGTGACGTGGAGCAACACGGTGAATTGAGTTTACTGCTTCACTTCCGAAAGAGGAAAGCGGACTCGTCGAGTTTGTCCGTGTGTAGCAGCGACAGTCTGGACGAGGCCAAATCTTGCAGCTCGGACGGGACCTCTCCGGAGTTCTGCGACTTTGCCCCCGGAGAAGACATCTCGGTGTCGTCGTCCTCGAGAGACGAGCAAAAGACGGTGCCGCCCATAACGGTTCGACTTCACACGAAGAGCGTCGCCAAGTGCGTGACGGAGGAAGGGCGCACGGTTGCTGTCGGGGACATCGTCTGGGGCAAAATCCACGGCTTCCCCTGGTGGCCGGCCCGCGTCCTCAGCATCAGCACGAGCAGGAAGGACGAACGGGAGCCGCTGTGGCAGGAGGCGAAGGTGTCCTGGTTTGGCTCGCCGACCACCTCCTTGCTGTCGGTGTCAAAACTTTTGCCCTTTCTGGAGTTTTTCCGTTTGCGGTTTAACCGGAAGAAGAAGGGAATGTACCGGAGAGCCATTGCAGAGGCTGCCAAGGCAGTTGAACATTTGGCGCCTGAAATAACCTCTCTTCTGACACATTGTGAAACGTAGAGACAGAAGTTCGGAGTTCCGCTGTCTTCCAAGTGAATAATAAACCTCCAAACCTCCTGCTGTGTCCCCCAGGATAGCCTGCTGGGCTCCACACTCCTTGCAATGGGAAGAGCTTTACAACTGTGGAGAGAGCAGGACGCCTGGGCAGAGCGGGGGGGCGGCGTTGGGGAGCGAGGTCTCTCACGGACAACTTAAGGGTTCCCTTTTTATAGAGTTTCCTTCATTTTAATAGAGTGAATAGACATGCTACAGccctgaatgtatttattatctacAACACTTTAGTCAACCTTTTACAATCTAAATCTCTTTGCTGCTGCTTGTCATACCTAACAGCGACGTCACCCAGTCGTGCACGAGACTGTTAACGAGAGGAACGAACGAACGAACGAACGAAGGGACGGATGTCAATGATCGAAACGTCTTCAGGGTCAATCCTCGTGCCATCGGTTTTCCTGATCCGTTCTCacacggaaaaaaaaaaacaagtcttatTGTATGGTTTTTACTTTACGgatatgaaaataatgtgaagcATTGTTTTTTCTGAGATCATGCAGTAGGTcttaaaatgcagtatttaattataattttttgaataGCTGCAGCGTTGTTCCCATTTCCTTGCCTATGCAGGTTTCAGTTTCTACAAAAcgagaaaaggaaaatgtttccaTCGCCTTTCTTTTTAGtaatttaggttttgttttgtaagttggTGACAGATCTATCCTTTCTGATTCTCCttactttatttaatgtttcagtAGAAGAAAGCACTTTATGTACCTTGGTGGCCTGCTGTAAAACCAATTTTTGAGTTTGTGTCACAACACTAACTGGAGTTAGgcagaaagaaatgcattaaatgttcTCGTAACGTGGATCAATATTGTTCTTGGTTTTAAAAGCGATGAATTTGAGAAACGGATCTTGGGTGGGGGGGATATATACACTGTATTCTTGCATTTAACTGAAATGTCTACCGTACATTTTCCAGAATGTTCCACTGGAGAAATCAAAGAGTCTAATCTCCTATGCATCACGTTTTGTATAAAGCTTTAAACATGGCGGTTCATGCAGGAGGGAGCTGATGGATGGGCTTGCGACtaatcagaataaaaaaaaaaaaaatgtttttttttttaagctaaagAATATGGCAAATATTTACTTGACCTGATCTGAGGAGGGGAGGGCTGGTAAAAATCTATACACTAGGTAATGTTGTGTTGGGGGAAAGGAGAGaaggtgttttaaataaaagtattgaatATTAAAAGCTCACTGTAATTGCACTGCCCTAAAAACCAAAAGGGCTTGGTTTctatttgtaaacatttatataaatctattttaataagTCGAACAATGTTCACGCATCCATGCCAGTTTCACTTGTACACACGTATATGCCTCGTCCGACAGATTCGCACGTCTTTCGAGATGGGAAGCGACAGCCAAATCGATTGCATGGGCAATAAAAGTTTCTTGCTGTGACCCTTTCGGATTTAGTGAGCTATTTTTGatttactgtacataaaataaaatatccaagCAATATTCTTCTTCCAGTCTggagagatttattttgtttgttttcggaGATTTTAAATTTCACGTTCTTTAGTACTTGGGCTGTGAATGTAGACATTttagtaataatatattcttCTTAAGACTCTGGTCAGATTCTTCGTGCTATTAATGACTCAGACCCTGATCTCTTAGTGTTACTCCTAACCCATCATAATTACTCCTTTTAAAcccacattttaaatcatttcacACCTCTTCAAGTCCTCAGGGCTCCAGGCTTTCGAGAAAAAAGTGGACAATTGTTTTAGAGTGCAGCATTTTAGCTATTTTCTCGTTTAGTGCCTTTTAGACCTTGCGACTTCTCTCCAGTCCCCATTGTGAGTGATTTAGTAAAGCCTTTTCCTAGATTATAAGATTAGCTTGGCCACGTGACTTTAGGCAAGCTATTAAAATGGATGTTTGAACTATGCATCTGTAGCACACAGATATTTGTGCGTGCTCAACCGGTTTGTCACACATGTTCATATCCCACCCAAAATTGAAGATATTCTGTCTGACTTTCCCAGTTCAGCAAGTTTAATCAAATGAGATGTTGCAACTGTGGAAAAGGTCTTAATAagttgattaaaaatacatttaattgaaataacaaACATCGTTGTGACTGAGGACCCTGTTGCTCTCGAAATGTGGTTCACATGGCGAATGGTATGACATTGAGCTGTTCGTTTTTGCACATTGTCGAGTAATGGTACGGTTAAGGATTGGGAATGCAGTcttggcatttttaaatacctaCTTGGGGGGATGTGTTATTTTGGATGTGGCCAGTTCTAAAGCCTGTATTTATCATGCAATTCTGATTCTCCTAAATGTGCAGtataagattatttttaaactagttGTGAATTTGACTTGTTTGCATAAGGCTCTTGCACCAATTACGGCTTCTCTTTCTATTCacatatgaaatgtaaaatggaaAGTCATACCTAGGAATTGTGGTTTCCTCTTTTTATTAGCATAAAAAGACAAAGTCCAAGTGAGAACCTACAAGTGACTACAgtgttacttttgtttttaacgtACTCTTTGGCAagttcccccccaccccacccttgTGCGGTTTCACTTGAACATACATCGAGTTACTTTTGagtgttttaaagcattttcgTTGTGTCTTTATAACTTTGATCCTGGAGAAGAAACCTTTCTTGTGTGGCATGCACATGCTATTTCAGTTTGAAAAGTCAAATCCATCTCTTCGCACCTGCCTGTTGAGGTGCTTCATTTGAATGCCGTAGAATCCCAATCAGGAGATAAAATTAATGTTGTGGATTCTTTCATATTTGAGGATCATTTCCCCCCCGGGCAGTGCTTAACttccttttgttatttaatttgtcacccatatTATTTCATTTGCATGACAACACAACATTCAATTGTTACTCTGCTTTTGCCCGCCTTCCTTCTGTCTGTTCTCACAACCCAAACGGCTTGGTTTGCAAGGCTTCATGTGGTGGTTGACCGTGTTTTCATTTTCCCTGTCCCCTTAGGATGTTTATTAGCACTACCAGTTGTGTGCTGTTCTACATCTGTGTAACATTACTGTAATCAGAAGCAGTGCACTGAAACGCAACTCCATGCTTCAGTTTAGAAGAATCAGCAACAGCTATGCCCTCTGTTTGGGTTTTCAGAGTAGACGATTGGTGGAAAGCAGTTACTTTACTACTAGTTAGTATCTCTGTATCTCGGTCTCTTTCTcgtctttgtttgtgtgtatatcgGATGGTAAGTAAAATTGCATCTTTAACGCAAGGGTTCACAACCCTGGTCCCGCAGGAGTCagtaccctgctggtttttgttcagccgagctctcaattacttaattgaacctaatttgaagtaacaatctgctagaatttgacttttaaaataaaatagttggttctttatacaattctatacttaacttaacacccctactgttttaaaataattcaaagccTCAGATGTAGGAAAttatgacttcaattaaggattcacttaagtaattgagagcttggttggaacaaaaatgtCTGCCTCATCCGTGCTGTCCTAATGCATCTTGGGAATTATGTGCAACAAAACACGACTGGTACTCGTCTTTGGCAGTCTCTGCTCCCAGTGAGGTTTCCTCAGGCTTCTGACAGGAAACGAAGGTCACAGGATGGCTGGTGCCACTGAATCACTGTTTGccttcaataaagaaaaaatgggttttggaattaaatcaaaaaccaAAAGGCATTGTGTAGTAAGCAAGGCTGCGGCCCATGTCTGCATGTTAAGTGTTCATCAGTGTTAGTCCCCACTCTCAGGCCAATgacactgtaaatattttgaatgaacAGGTGATAAATGGTACAGTGGCAATGTGTAGCTTTGGTATAAAAGGTCGGACAAATCTAGAAAACTGCAGGTGGAAGAGGGAACAGATGTCAGTgtcatagatttgtttttctactcCAGAGTTGGCTACAGATTCGCTTCTGTAACCAGAATTGTTTCTTGTAAAGACCATCAAATAtggtatttttacttttgtgtcCTTTGCAAGTCCGGTATACGTAATTAGACATTTATTGAACAAGAAGTATAAACCTCCAGGTTGAATTGGGAACCTTAGAGCTTAAAGCCAAATCGGTTGATGTTTAGTTTCGCAGGTTGGTCTGCAGTGGTGAATGGTGTCATCAACATAAACCTTTAAGTCCAATGAAAAGGCCTGGAACCACACAAGTGTCAAGATATGTGCAGACGCTGTCGAGCGCTTTTCATTCGAACGCATTGAACACCGTGTCATCCTTCCAGAGAAAACAGGTCTCAATCTGCGTGAGATACAGGAAAGCTAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002832 True 6490 mRNA 0.45 3 4056439 4071275

Neighbor

gene id symbol gene type direction distance location
AMCG00002831 NA coding upstream 3855 4043593 ~ 4052584 (+)
AMCG00002839 NA coding upstream 15038 4037710 ~ 4041401 (+)
AMCG00002835 LOC108269590,LOC107750875,LOC107583634,LOC107668614 coding upstream 22807 4031368 ~ 4033632 (+)
AMCG00002833 NA coding upstream 34045 4016680 ~ 4022394 (+)
AMCG00002834 NA coding upstream 49966 4000290 ~ 4006473 (+)
AMCG00002840 inpp5a,LOC106605012 coding downstream 91251 4162526 ~ 4186873 (+)
AMCG00002842 valopa,LOC107570927 coding downstream 182484 4253759 ~ 4267239 (+)
AMCG00002846 NA coding downstream 320079 4391354 ~ 4399257 (+)
AMCG00002845 NA coding downstream 379366 4450641 ~ 4466193 (+)
AMCG00002850 adgra1,LOC105025939,LOC106604940 coding downstream 419952 4491227 ~ 4513971 (+)
G138940 NA non-coding upstream 31694 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 66091 3989924 ~ 3990348 (+)
G138905 NA non-coding upstream 127785 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 328708 3727497 ~ 3727731 (+)
G138871 NA non-coding upstream 678412 3376246 ~ 3378027 (+)
G138946 NA non-coding downstream 1006 4072281 ~ 4076788 (+)
G139038 NA non-coding downstream 512590 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 555382 4626657 ~ 4712825 (+)
G139084 cpeb3 non-coding downstream 727338 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 996197 5067472 ~ 5068895 (+)
G138941 NA other upstream 26515 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 460331 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 940358 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 1561845 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 2646351 1406611 ~ 1410088 (+)
G139176 NA other downstream 1025456 5096731 ~ 5098744 (+)
G139492 NA other downstream 2076473 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2995580 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 3305412 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3837977 7909252 ~ 7920908 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G680219 NA non-coding CI01180000 null 2877311 ~ 2889630 (+)