RNA id: TU174942


Basic Information

Item Value
RNA id TU174942
length 3381
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G139084
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4798613 ~ 4802244 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCAGTACAAAGGCTACATTACTATTGAAAAATACTAGCATGAAGATTAGGTAAATACACAGTAGAAAATGATCTTCGTGAATCACAAtgtttgcaatgaaaataaatctgcaataAAGATttatgccttttttctttttctatttttttttatatacaaacagtACAAACAGTATTGCACATTACAACAAAGAATCGAGGTTGTTAGCCTTCAAAAAAATCTGACTAATTCAAGTCTTACATGAAAGGAAGGCCACCAATGACCTGATGCACCGAGGGGCTTTCAATcaagttacagtttaaacactttgaatttaaaaaaataacattctgtttcttcttcttcttcttcttcttcgcaAAGGACTCGCCGAAGTCTTTAATAACATCAAGTAAACAAATCAGGGCGtgttaatttacaaaacaaaagggaGCACATACTTTTaggaaacataaaaaagttctcttaaaaaaataacatgaacagAAGATTTCTTTCACAACTCTGGTCAGCGTagtaaatgattaattataaatatacaaaaacaaggGAAACATCTTCCATTAATCCTCTCAGCACCAAATTTGactattttaattatgtgatttttttcattcaaaagaATCATGATTAACTGATTTCTACCCttgaataatatttaatatttcacaattcCACGGAAGGTAGATGTGGGGAATTTCTTTACCCATGTCTTCTCCTCTGTAATAAGGTAGACTCTGTACTTTTGCTaactacattatattaaagTTATAAAGCTCTAGctccttcagtttttttttccaaaataaaaagcaaacaagcatgaaaaaaataaaattaaccatctgttaaatcattttcttacagaattaaattaatatatatcttTTATTCTGAATAAACTCACTTAGAAAATATCAATTTCTCTCCTATATTTCAAAATTGAGGTATTGCAAAACATCATGTCAGTCAGAAAGCACGCTTTTatcgtttatttttttctcttaaaaaataaaataaaaaataaaatgaaataaaaaaagctgaCTGTTGAAAACTGTCCAGATACAAAAAGTAGTGCATAACAAATGTCTTTTACagataatgaaaaaacataGAAAACCCTTCTGGGCAGGAAAGCAATATCACAAAAAAGCCCAGAATTAACCTCGAAAGGGATACTAATCATTAtaagccatgtttttttttgttttttttttgtttcattgttagttttttttcttttaatcagtaaaaaaagtaatttgttttctttttttttgccccccccagaaacaaaaacaaaaagtccatCCTAAAGCCAATACTCGcaactaaacaaagaaaaagactcAACTGGACGAAAACAGGacttcacaaaacacaaagggACGCACGACAAACACGTCTACTAATGCGCTGTTATATCCTGTTGGATTGTCCCCCCAAAACtgctaaaaacaaatgtccacTACTTTAGCAGGTCAGAATTATACTTCAAGCTTCGCAGGATACATCCAGGGTGTAGGGAGCTCAGTTTTCCAGATCAGACACCTCCATTTTGACAATTGTGCAGACAATTCTTTAgcgtttgttgttttgttgttgtcgttgtgtgttttcttcttctacCGATTACCCACGAGATGTGCCTATTTCATCTGCCTGCCAAACAAATCTATTGAGAGCCTGACAAATATATGAAGTTGTAATGGTTCTgtgttgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgccaATACACCGGTTATGAAGCTTCACAAAACTTCTATGTCAGACATCAACAACAGTTAAAGCGAATCACAGTACTAGGCGTAATCACcctactatatatacaaaaattgcacaattatatattaaagatcacTGCAAAATTACTTCACCTACCATAGACAATTGTTTTAAGGATATCCTACATCTAATTCATTTATGATAAACTCTTGTGTTACTTGTTAATGCTTTAACGGACACAGTTTCTAGTTGCAGAAGCATTTTAACTGAGGCATGCCTATCTTACGGTAATCAGCCAATTCGGTATACGTTTGATTCCCCGTTGTAGTTGTTTTATATCGTAGtctacatatattatttatcacTTTGTGCAATGTGGGCAAAATTATATAATAGACATGGTATAGAAATTCTATTGCATGCAGCAAcctgatttaaataaacatgcagtGAGAAATCTACCCACTTCAAAAGGAACTCGCCTCCATGCTAGTCTACTCTCTCCAGCAGCAATTGAGCTTCATTTCATTGTATTCGTCTTTTAAATGTTCACCCTAGCCTGAATAAAGTACTATGGTATTAGGAAATACCACGTATTTAGCAGCAAAAGCTATTGcagcatacatttacataacactaaaaataaaaatccaactaaacaaaataaaagcaacataaaaTAGAATCAGATTGAGCTTATgaggtattatttttttccaagtcAAAATGGAGAGCAAATAAAGGCTTGTTATTCTaagtaggtttttttttctttttctttaattcacCCAGATTAATGTGTGTTAAGTTTTGCTACATCATGTGCCAcctatgtttgttgttttttttgtaatttttttttacctttggTAATTTTTACTAGGGGCAATGTCCtaccatttctgaaaataagtgCATGCTCCagtcacataaaataaaataatctatatatagatagatacaaaacaaaaaaatatataattttaatatatatcgTATCACTTCAGCAACAGCCAGGTATTTTGGCTGACCAGGAATAGCAGACTACCAAAATCTATGGAACAAGTGActtagaaaaatgaaaattcagGTACCAAGCAAGATATtatttcatgtgtgtttgtgttgtttttttgtgccaAAGTGCAAATTCTTTACagttaaacttatttttttttcccatttcagTTATAGAAATACCAGACAATGAGTTcaaaacagtaaattaaattaaattaaaaaaagacccattttgttttctctttttatctCCGAATCTGAGGAAGAATGCACCGATCTCCAGGAGGCGCCCCGGCCCGTGTCGGCATTGCCGGGCCGCCGCGCTCGGTCCGCTGGGCTTGCcgtcggggtgggggggcgctGGTGGGCGGAGGCTTCAGCTCCAGCGGAAGGAGACGTGGCGCGGCCGGTCGCCCCCCTCCTTCACCAGCGGCTTGTGGAACTCCCTGCCGGCGCGCGAGTGGATGCTGGCCCAGCAGTACTCACAGTAATACTGCAGACATGTCACGTTGGCACAGAAGAACGGGGCGAACTTGCCGCCGCAGCGCGCCCCCTGGCACTCGTCACACATCTGGTCATCCAGGACGTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174889 lncRNA upstream 85788 4626657 ~ 4712825 (+) True G139044
TU174883 lncRNA upstream 214446 4583865 ~ 4584167 (+) True G139038
TU174771 lncRNA upstream 721825 4072281 ~ 4076788 (+) True G138946
TU174763 lncRNA upstream 773868 4024442 ~ 4024745 (+) True G138940
TU174744 lncRNA upstream 808265 3989924 ~ 3990348 (+) True G138927
TU175041 lncRNA downstream 265228 5067472 ~ 5068895 (+) True G139170
TU175087 lncRNA downstream 437106 5239350 ~ 5239490 (+) True G139205
TU175122 lncRNA downstream 564191 5366435 ~ 5366683 (+) True G139238
TU175151 lncRNA downstream 637533 5439777 ~ 5442279 (+) True G139263
TU175250 lncRNA downstream 1015808 5818052 ~ 5819125 (+) True G139351
AMCG00002858 mRNA upstream 2309 4775371 ~ 4796304 (+) True AMCG00002858
AMCG00002852 mRNA upstream 30937 4763141 ~ 4767676 (+) True AMCG00002852
AMCG00002853 mRNA upstream 50472 4734674 ~ 4748141 (+) True AMCG00002853
AMCG00002849 mRNA upstream 224447 4568555 ~ 4574166 (+) True AMCG00002849
AMCG00002847 mRNA upstream 234072 4533786 ~ 4564541 (+) True AMCG00002847
AMCG00002861 mRNA downstream 48546 4850790 ~ 4867571 (+) True AMCG00002861
AMCG00002857 mRNA downstream 72639 4874883 ~ 4877336 (+) True AMCG00002857
AMCG00002863 mRNA downstream 106257 4908501 ~ 4918521 (+) True AMCG00002863
AMCG00002862 mRNA downstream 126186 4928430 ~ 4933205 (+) True AMCG00002862
AMCG00002864 mRNA downstream 149856 4952100 ~ 4952405 (+) True AMCG00002864
TU174764 other upstream 768689 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 1202505 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 1682532 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 2304019 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 3388525 1407046 ~ 1410088 (+) False AMCG00002762
TU175054 other downstream 294487 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 1345504 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 2264699 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 2574443 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 3120938 7923182 ~ 7926832 (+) True G139784

Expression Profile