AMCG00002847 (LOC104962727)


Basic Information

Item Value
gene id AMCG00002847
gene name LOC104962727
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4533786 ~ 4564541 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002847
CGGGACAGGGAAGGGCTGGGAGAAACTGCGCAGACTGAGACACTGCGGTATGGCAGGGCCGGGGGGGCAGGCTCCTTGCACTTAAAACACAGGCTTGCGATTCAGTGCCATGGGGACTTTTGAGACGGCCGTGGCTGTGTAttatgaggaggaggaggaggaagaggagtacTATGACTTTGAGCCTCTGCCCACGCTGTTGGAGGATGAGGAAAACGTGTCCCTCGCGGATATCCTGTCACTGCGGGACAACTGTCTGGCGGAGCAGGAGATCTGGGCCGTGTGCCTGGAGTGCGCCCTGTCCCTGAAGTGTGTGGCCCACTCTGCCCTCTTCCACACGCTGTGCATCACCCCCGACACGCTGGCCTTCAACGCACATGGCAACGTGTGCTTCATGGAACAGCTGAGCGATGACCCAGAGGGTTCCTTTGTTCCTCCTGAGTTTGACAGAACAGGGAACACGTTTGAAGCACACGTGTATTCCCTGGGTTCGACCCTGACAGCTGCAGTGGAGTTTGTGATTGAGCCCGAGCTGGAGACGCAGCTCAGCCAAGATCTGAAGGTGCTTTTGCATCAGATGCAACAAGAGAATCCAGAAGATAGACCAAATATTGAGGATATTATTGCACTTGGGGAATTAAAGCTAAACCATTTGTCATCTGCCAGTATTTGTCGCAAACTTTCTGCCATAGGAAGAAGAGTGTTATCAATTGAATCAGTGGGAACATTTCAAGATGGGTGTGATAATTCGTGGAAAGTTATAGAGTCAAAGGCCGTGTTTGGACTCAAGCGGCAGGTTTTTGAACACAATCCAGCCGATGGATCCTCAAGCGACGAAGACCTGACTGCTGATCTGAATGTGTTAAACAATTGCATTGCAGGCACGACTGAAGGAAGTATGGCAACGCAAGATGCAGAAGAAGAGGAAGCTTTACTTCGAGATGAACTGACGGTGAATCATCTGGCTCAGAGGAATGGAGCTGAATGTACTTTTGAGCTGCGGTCCAAAAATGCGTCGACAAGAGTAGTACTGGCTGCACAAAAAACATCTCCAGTCAAGGAACCACGAGCAGAGCAACACCTAAGGACATTGTCCAGCCTGAATCGTCGCAGTCCCGTCTCCAACACCGGCGCTCTTCCGATTCTCCCATTCCACGTCCACAGAACTGTGTCCGTCACCGATCTCTCTGAAATAGCACCGGAGGAGAAAACGGTTACAGCGGCCGGTTCGTTTGAAAGTAACAATTGCAAACCGTCGTCTCAGTGTTCAAATATTCCCGAGCTCTTCTATTCCAACGATGACATGCATGTGGGTACTGTGGAGTCCCTGGAGTGTTCCCCGCTGCGGAACGGGAACAGTAACTCCTCGGCGAGACGCGGTGTCCCGAGCCTGATGGAGCTCAACACGAACACGGCCTCCACCCTGAAAACGGAGACGGCTGCTCTCAGGTCTTTCAGCGAAAGCTTGGTgaataacaatatatacagctctgacaACCACCGGACGAAAAGCATGCTCTGTCTTAACGAAGAATCTCAGGATGAATGGATCTCCCTGAAAGAGCTGCTGTCTCGCTGCGGCCGGCCGTTATCGGTTAACGagctgtgggctctgtgtcACGCCTGCCTCTCCACGTTGCAGACCTACATCGATTACCCAGCTGTCTTATGCTTGGACTCGGTGTATATTGGCTGTGAAGGGGAATTGCTGTTCTTGAACCCCAAAAACACAGGCTCCTGCGATGCGTTTTATTTGGCGCCAGAATTCCAGGAGCACGGAATTGTCACAGAAAAGGTGTGTGTTTACGGAGTGGCGGCTATACTCTGGGCTGCGGCGAAGTTTAACTCCTCGCCAAGCCGGAAGTTGGCTTTGCCGAGAAAGTTGAAAAGACTTCTTCTGGAAATGGCCAAAAGGACCCCAATAGAGAGACCCTCCATTGCTTCGGCACAAAAGCCACGCAGAGAAGATGTGGCCGAACCCCAGAGTGTGCTGGATAATGAGACGACATCTAATCAACAAGATTCTTCAAGTTTTAAAACTGGATTTGTGCCGATTGTTGCCGAGACCCGGCTGTCCGCGGTGCAAGGCCCGGTCCCTTGCGGTTTCCCTTCGAGCTGCTCCTCTCAGCTGCCCGCGGCCTACACCTCCCCCGCGACGCACTTCAAACCCATCATCCTGTCCCAGGACACAAAAGGATCTACAAATGAATGTACGAGTTCCAGTGCCAAACCACGTGGGAAAGCCACGCAACATGAAACAATACCAAAGAAGGGCCCGGTCGCTGCTAAAGATGTGACCCCAGAGGACAGGGAGCTCACCGATGCTTTAATACGGGGGGAATCGCACGGCAGCTCCTCCGTAGAAAATGACTGCTCTTCCACGTCTTCCAGTGGGAGAACGCTGATAAATTCCCCGTCTTTGGTGTCCCTCGTCTGCACCGAGCAGGAGAGGTTGCGCACCATGGACCCTGCACCTGTGGCGCGGCCGGCCGTTGCTCCGGCGATGTCTGATAACCCCATGGGTAATCGCTTTAATAACTTTCTCCTGAGACAGGATCCTAAAACCGGACTCCTGACGTTATTGCCGGTACAGATCGCTATTCCCGAGCCGATACCTGGCCTGGAGTTCGACACCGTCCCACGTCCAAGAAAGCCTCCAGACTCGACAGATGACGAGGTGTGGGGGCCCATGAACCAGAAGAGCGGGGTTTGTGACGCATCTGGTGACGACCCGAATCGTACGCCACGCGAGAGCGAGCGCCGGAGACACCGCAGCGCCGGCGCCGAGATCTCCGGGCCCCCGGCTTCTGCTCCGGTTGTTTCTCCGACACCAGACCGTTATGCCAAGCTGTCACCAAAGCCCCGCGGCAGTGGAGTAACGGAGGTGGACGAGAAGGTTAATTCCTCCAGAGGTTTCCCAGAGGACAAAGCTGTAAAGCATCTCCTGTCCTCTTCGTCTCTGTGCCAAATGAATGCGTGTCTGCTGAGTGTGGTGCATCTGATTAAAGAGGAGTTTGCGTTTGATGGCTATCTGGAAAACGGAGTTGAAGACCTTGCAATGGGGGAGTACATCTTATCGCTGAGGGATCTCCAGTACGCCACGTTCTGCAGCGCGGTGTCGGAGAAGTTCTGTGATCTGTACTGGGACGAGAGGCTGCTGGAGGCGCTCTACAAAGTGGTCAACGGGAAGCACGGTGGCCGAGGCGCTCTATCCTATTCAAAATCCCTGTCCAGCCTCGACCCTCCCGTCCAGTTCCCATCGAGGGTCAGTAAGAGGGCCGCGTCGCCTCCGAGTGGTCCGCAAAGACGCCTACGCCTGAAGGAAGTGCCCGAGCACTGGCAGTCGCTTCCGACTACCAGAGACACGGGTGTACAGGATGAGCAGAGCAGAGAGGGGGGAACTGCGTCTTTTGATCGTGCCAGTCCAGATTTAAATCCAGTGGACTGTCCTCAGACACCATTACTGAATGATAACTCAGAagGAAGAGGTGACCGTTCGCTCTCCGCCGCCGTGATCCTGAAATACCCCAGAGCCGATGACATGGACTCGAGTGACACCCCTCCCGACGGCGCAGACGAGACCCCCGCCGACTCTCCGTCGTTCTCCGCGAGGGAGGGCTGTTTCTCCAGCAGCGCCTTCTCCGTCCGGGGAGAGAGCCTGGATTACTCGGAGGACGACGACTCCCTGATCTCGGACAGGATGCCGGAGAACGGCCGCTCCCCGTCGCCCTTCCCGGGGGACCTGCGGAAGTGCAGTGCCGGGTGGGCCGTGGCTTTCTACGGTGAGGAGTGTTTCGGGGAGGACGTGCTGAAGTACGTGAAGAAACTCGGGAGACGCAACGACTCGAGGTGCATGGAGGCTAAAATGCTGGAGCTTCAGCAGCAACTGATGATGGAGACGAGGAATCTAAAGAAGACGAGGATTTTCTACCAAAAACTGCTTCACCAAGAGAGGAAGAACAAAGGTTCAGAAGCCAAAATCATGCTGCCCAAACTGAAAGCGCAGATGGAAGAGATGAGAACCAAAGTCGAATTTCTGAATTTAGTGAAAAAATATCTTGTGATCCTGTGTGTGGAGCAGTGGGGTCTGGAAGTGTCTCTCCTGCCCTCGCTGGCCCAGTCGGGGTCGGACTTGCTGGATCTGCAGCCGCAAGAAAGCTCTCCTCTGCTCAGTTTTCAACAAGGGACCGCAAGAGGAAAAAGCAGCCCaagcaaaatgaaaaccttGCAAGCTGGCACACCTCTGGGACTCATGTCATACCTCTTTGCCAGAAACGCAGCTCTGCAGGGTTACATTCAGCAGTTCCTTTACATCTTCCGGTATTTCTGCTCACCGGAAGAACTCTTACAGTTCCTGATTGATAAATGCACCAGTGCTGCCGGTGCAAATCAAGGGGGTTCTGCAGATCACAGGAAGGTATACAGCAGGAGTTTGGATGTGCTACAAGCATGGGTTGAAGACTGcaaacaaatagattttttacCCAAGTCCAGCCTGTTGCAGACATTGGAAGAGTTCATTATCTCCAAGGTGGTCCCATCGGACAGTAGGGGagagagcctgctggccttgaTACAAAGTGTCCCTCAGAGGAGGACGAGCTGTGCCGCCCCCTGCAGCTGTGACAGCGCTATGACCACGAATGACCGAGAGGACACCCGGTCGCTGACCTCGCTGTCCAGGAAGACGCCGGCGGACGATCCTGCCAGAAAGggCTTTCACTGGAGGATCTCCAAGGCGGCCGAGCCCCCGATGGTGCTGCAGAAAGACAAGGCCTATTCGATCGCAGCCGCCTTGCCAAAGCCCTGTTACTCCTCTCTAGTGGAGGAACTCGCCGTGTCGTGCTTGAAAATGGAGGACAAGAATCCTTTCTTTCAGAGTGAATACAGTGTGCAGCAAACAGCCCAGCAGCTCACCTTATTGCAACAGGAGATATTTCAAGGATGTCACCCGGTGCACTTCCTCAACTCCAGAGCTCTGGGAGTCAAAGACAAAACGATGAACATTACAAGGACCTTTTCGCCCGAAGCAGCCGAGGGCAGCAGCCTCTTCGCTCCGGTAGTGCCTCTGGACAGATCCTTACTCCAGCTGCTGAGATTCGCGGATAACGTCAGTAACTGGGTGTCTGCGGAGATTGTCATCGGTGACACGGTGAAGACACAGACCGGATTGCTCTCAAAATTTCTTCTCATCGCCAAGTTTTGTTACGAATCCAGAAATTTTGCCACAGCTATGCAGATACTTGGAGGattagaaaatgtaataGCGTGGAAGAACCTTTCGGCAAAAGTGTGTGACATTTTGGAAGAGCTGAGGGCAGTTCAGGTGTTTTTAAAGAGTGATAATCTGTGTTTAATGGAAGGAGAGCAATTTAAGAAACTCCCGACAATCCCTGCGGATCACGTACTGGCCATGCATGTCCAACAGCTGGAGATTGGTGCGTTCACGATGGCGAATGGAGCCTATAAGTGGCCCAAACTGAGgAACATTGCAAAGGTGGTCAGCCAGGTCCACGCCTTTCAGGAGAACCTGTACGCCTTTGTGCCCGACGTGGAGCTGCAGACCTACCTGAGGCACCGCGTCGCCCGTTTCAGCGACGCCGACATCCCCCTCCTGGCCGCGGAGAACAATACCAACTTCCACCAGATCCCCACCGACAAACACTCCCGCAAGATACAGGACACGCTGCGCAGGATGAAGGCGACGTTTCAGTGATTTTCTAGGGTAAGGGCTCACCGCctcatttattttgatctccAGCTTGGTGTTCAACACCCCGTTGACTTTTTCTCCCGTTTCTTGGCATGCACAGAGTGCTTTGAAAGCTGACCCTTCTCTGCTGCGTACAGAAACGTCTTCGGCATCCTTTGCCATACAATGAAACTGCTGCACAAATCCATTCACCGGGCTATGAGAAGTGGATCTCCCgaattgcaaataaaacaaaactgaaactgaaatctaTTATAATGATTCAGATCTGCCTGTGTATGTGGCTCCTCTCTCGGCTGTATCCATGTCAGTGAAGATCCGTACACAGACTTTTCGATGGATTTCAAATCTGCATGCGTTCAGACGTGTCCTTAAAACGCACGACTCCAAAGTGACAGCCGCAGGTTCGAAACTGAAAACCTAGTCCAGTTTCAAATGCTGGCTGACTCCCACCAGCTCTTGATACAGCAGTTTCCACCAAATCTGGGCCGTGGTTCAGAACGAAAACGCCTTCCCACCGCAGAGGACTGATATGAGTCACAGCAACAGCACACAGAAATGTCCTCTTTATTTTTGAGTTGTGGTAATAATACAAGGCCAAGTGAGTTTCCTTCCACCTAAATTGTAATCAAAAGTGTCTTTGAAGATAAATACTCAAATGAAAGATTACATTTGAGGCATTGTGCATCAATCTGTCAATCTTTCAATGCagtttaactttttcttttgagTACTGATTCTGGAAGGTTAAATGTGACTATTATATAACTGTACCATTGCATATTGGTCAGCAGTGCCAAATACGCTGCACATAGTTTATGCTTTAAACAATGAATTTGCTCTTGTAATCTGTATTCCTCCTTTGGGGTTTATATCTCATTTATTTCCTGGCATGtctcttgtgtgtttgtgtttaagaCTAAAAGACGTCTGCTGATTTCAGTAATACACACCACAGATAATGCTGGTAACACCGTGAGCTTATAAACGGTTTCATTTTCCGACTTAAATTGAAGACACTAAACTAACAACaagcaaacagaataaaacaccaGGGTGATGTctatcttttttaatttacaaatgcacTTTACTTTTCCTGGATAAATAGCCTTTCAGTTCTAAGGGGAATTTCTTCAGAGTAAACTGTGCAGAAAATACCATTAATTGCCAATGTGTGGAGGTAGAAATCTACATTGAAATGGTAGTATGGAGTGGAGAAATGTGTTTCTCACTAAAGCCAAGTTTTAGACAAACAAAGATGTCTCTAGATGAGTGGCAGATCGTTAGTGGTACCCTTGAATTTGGAGTACAAATaagcagatttaaataaatgcactatactgttttaaacttaaattcTATAAGTTTTCTTTGAATGCTGCTAAAGggtaaatgtttaatgtgtgtgtataggatatggtaaataattaaatatgttttcactTCAGTTCCTAACATGAATACGAGTTAAACAAATATTAGcaaaaattaccaaaataactGTGTAGTACttacaatgtgtatttttctaaCATGTCTCTGAACTAAAGGGtgtattgcaaaatatatttttaaaaataaataaataaaaatattcatcAT

Function

NR:

description
PREDICTED: protein very KIND-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002847 True 7318 mRNA 0.50 30 4533786 4564541

Neighbor

gene id symbol gene type direction distance location
AMCG00002848 NA coding upstream 11102 4521062 ~ 4522684 (+)
AMCG00002850 adgra1,LOC105025939,LOC106604940 coding upstream 19815 4491227 ~ 4513971 (+)
AMCG00002845 NA coding upstream 67593 4450641 ~ 4466193 (+)
AMCG00002846 NA coding upstream 134529 4391354 ~ 4399257 (+)
AMCG00002842 valopa,LOC107570927 coding upstream 266547 4253759 ~ 4267239 (+)
AMCG00002849 NA coding downstream 4014 4568555 ~ 4574166 (+)
AMCG00002853 NA coding downstream 170133 4734674 ~ 4748141 (+)
AMCG00002852 LOC107562385,LOC104957417 coding downstream 198600 4763141 ~ 4767676 (+)
AMCG00002858 btaf1,LOC107679172,LOC106604898 coding downstream 210830 4775371 ~ 4796304 (+)
AMCG00002861 march5,LOC107549154 coding downstream 286249 4850790 ~ 4867571 (+)
G138946 NA non-coding upstream 456998 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 509041 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 543438 3989924 ~ 3990348 (+)
G138905 NA non-coding upstream 605132 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 806055 3727497 ~ 3727731 (+)
G139038 NA non-coding downstream 19324 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 62116 4626657 ~ 4712825 (+)
G139084 cpeb3 non-coding downstream 234072 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 502931 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 674809 5239350 ~ 5239490 (+)
G138941 NA other upstream 503862 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 937678 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1417705 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2039192 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3123698 1406611 ~ 1410088 (+)
G139176 NA other downstream 532190 5096731 ~ 5098744 (+)
G139492 NA other downstream 1583207 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2502314 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2812146 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3344711 7909252 ~ 7920908 (+)

Expression


Co-expression Network