AMCG00002848


Basic Information

Item Value
gene id AMCG00002848
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4521062 ~ 4522684 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002848
ATGAAATATTTACTGCATATCGTGttgtctttccacagattttATTTAGTCAGTGGAGGAGtaccatttattatttgtggAATCACAGCAGCAACGAATATCAACAACTATGGCAGCGGAGAGGAAGCCCCTTACTGCTGGATGGCTTGGGAGCCCAGCCTGGGTGCATTTTATGGTCCGGTGGCGTTCATCGTGCTGGTAACTTGCATCTACTTCCTCTGCAGCTTTATACAACTGAAGCGCCACCCAGAGAGGAAATATGAATTGAAAGCGATGACAGAAGAGCAACAGAGACTGGCCACCACAGAAGTAGGCCATTGCCACATGGCAGATTCGGGGGCAGTGTCACAGAACACTTGCTCGGTGATTTCCGCATCGATGCTCAAGAACGAACACTCGTTCAAGGCGCAGCTTCGAACGGCGGCTTTCACTTTGTTTCTGTTCCTGGCAACGTGGACTTTCGGGGCCCTCGCCGTGTCCCAGGGCCACTTCCTGGACATGATTTTCAGTTGTTTATATGGAGCTTTTTCCGTAACCTTGGGACTTTTCATCCTAATCCATCACTGTGCGAAGAGAGATGACGTCTGGCATTGCTGGTGGTCCTGTTGCCCCTCGAGGCGGAATACTTACTCCGTGCAGGTCAATGTGCGGCCCAAGGTGAACGTCAACGGAGACACCCAAGTGCACTCGCATTGCCTCCTGGATTCTCCTTGCCCTGGCAAAGCGGTGGCGAGCTTTAACCACGCGGCGTCCGGACACTGCAAGCTGACTAACTTGCAAGCCGTCCAGAACCACGTCAACTGCCTTTCCCCCGTCACCCCGTGCTGCGCCAACATGCACAGCGAGCAGCTCCTCGACGACGAGCCACACATCCATGTGCACTCGGAGGAGGACTTCAGACCCAACATGCACATCCACCGATGTCTGAAGAGCAGAACTAAGCCGCGGCACTTCACCCGTCACAGGACTGCGGGAGACCGAGAGTACGCCTATCACATCCCCTCCAGCATCGACGGGAGCGTGCACAGCTCTCACACAGACAGCCCTCACAGCACCCACGACGGCCACACGTGCCACAGGCGGGTCTGCTGCGCCAAAGCGGATCCCTTCCCCACGATAAGTCAGCCTGAGAGCAGCGACGCCAGCACTGTGATGTGTAGCTGCAGCAAAATGCCAGACGAGGATATTGTGCAGCACCATACTGCCCTTTTAGAGATGCACCCGCGGAGACAATCGTACCCCCAGAATCCACCCAATCAGAATGGGATTCTGAAGGGCAGCTTGCACGAAGGACTCATGTACAGCTCGGATAGCACCGGCAACATCCGGACTGGCCCGTGGAAAAACGAAACTACTGTGTAG

Function

GO: NA

KEGG:

id description
K08460 ADGRA1, GPR123; adhesion G protein-coupled receptor A1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002848 True 1362 mRNA 0.54 2 4521062 4522684

Neighbor

gene id symbol gene type direction distance location
AMCG00002850 adgra1,LOC105025939,LOC106604940 coding upstream 7091 4491227 ~ 4513971 (+)
AMCG00002845 NA coding upstream 54869 4450641 ~ 4466193 (+)
AMCG00002846 NA coding upstream 121805 4391354 ~ 4399257 (+)
AMCG00002842 valopa,LOC107570927 coding upstream 253823 4253759 ~ 4267239 (+)
AMCG00002840 inpp5a,LOC106605012 coding upstream 334189 4162526 ~ 4186873 (+)
AMCG00002847 LOC104962727 coding downstream 11102 4533786 ~ 4564541 (+)
AMCG00002849 NA coding downstream 45871 4568555 ~ 4574166 (+)
AMCG00002853 NA coding downstream 211990 4734674 ~ 4748141 (+)
AMCG00002852 LOC107562385,LOC104957417 coding downstream 240457 4763141 ~ 4767676 (+)
AMCG00002858 btaf1,LOC107679172,LOC106604898 coding downstream 252687 4775371 ~ 4796304 (+)
G138946 NA non-coding upstream 444274 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 496317 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 530714 3989924 ~ 3990348 (+)
G138905 NA non-coding upstream 592408 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 793331 3727497 ~ 3727731 (+)
G139038 NA non-coding downstream 61181 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 103973 4626657 ~ 4712825 (+)
G139084 cpeb3 non-coding downstream 275929 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 544788 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 716666 5239350 ~ 5239490 (+)
G138941 NA other upstream 491138 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 924954 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1404981 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2026468 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3110974 1406611 ~ 1410088 (+)
G139176 NA other downstream 574047 5096731 ~ 5098744 (+)
G139492 NA other downstream 1625064 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2544171 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2854003 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3386568 7909252 ~ 7920908 (+)

Expression


Co-expression Network