AMCG00002849


Basic Information

Item Value
gene id AMCG00002849
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4568555 ~ 4574166 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002849
ATGGTCAAAAGTTTCTCCGTGGAGTGGCTGGCCCAAAGTCATCACCGGGTCTCCACCATTGCGCCTCCAGAAGACCACGCAGCGCCTCGCAGTAAACCTCACATGCCCTGCCTGGTCCAGCCTCGGCCACCAACATCTTATAGTAAAGTGTGTCTGCAGCCCAAAGCAAGGCTCTGCAAAATGGATCTACTTTCTGAGAGGGTGGAGAATCCAGTCCAGGAGGGATGCGATGCAACTGCAAACGTTTTAGAAAACCACGACGATTCTTCGGGATATGAGAGTGAGGCCAACTCCTCGGAGGGTCTTTTccctgaggaagaggaggaggaggaggaggaggaggaggctgaAGGGGAAGCCGGCGCTCAGCGCAGAATCAGGACTAAATTCACGGCGGATCAGATCCACAAACTGGAGAAGACcttcaacaaacacaaatacctGGGCGCCACCGAGAGGATGAAAATGGCAGCAAAGCTACATCTCTCTGAAACTCAGGTGAAAACGTGGTTTCAGAACCGACGGATGAAGCTGAAGCGCGAAGTGCAGGACATGCGGGCGGAGTACCTCAGCCCCGGCCTGCTGCCCCGCCTGGCTCTCCCGGCCTCCGCCTGGAGCATTCACACGATGGCACATTGTGGGCATCAGGATGGAGAAGAAGACGCCAAACTGGAGCATATAAAGCCTCATGTGCCTCGCCGGCCCAGCTGCGCTTGCAGAGACGTGCTGGTTCTGCCCAAAACACAGAAGAAAGCATCCCTCCAGAAGGAAGAAATCATGGACGTGTTGAACCCATCCTCTCCAACCGTCTCAGACAGTTGCGGGGATTCCTCGGGCTATGAAAGTGAGACTCAGTCCCCCGGACGCCCGTCTcccgaggaagaggagggcGAAGGGTCCCGGCGCAGGACGAGGACCAAATTCACGTCGGATCAGATCTGCAGGCTGGAGAAAACCTTCAACAGACACAAATACCTGGGCGCCACCGAAAGGGCGAAAATTGCAGAAAAGCTACAGCTCTCTGAAACTCAGGTGAAAACGTGGTTTCAGAACCGACGGATGAAGCTGAAGCGCGAAGTGCAGGACATGCGGGCGGAGTACCTCAGCCCCGGCCTGCTGCCCCGCCTGGCTCTCCCGGCCTCCGCCTGGGTTCAGCACCACAGCCTCCCCGGACAGCACCTCCCCCCGGCCCGCTTCAGCCCGGCGCTGGCCGCTCTCTACCCGCCTCTGATGCCGCACATCCCCGGGACACCAGGGCCATTCCCCCCGGCGGCATTTCAGTCATTACTGTTTCCAGCAAACTATTACTGA

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002849 True 1311 mRNA 0.58 6 4568555 4574166

Neighbor

gene id symbol gene type direction distance location
AMCG00002847 LOC104962727 coding upstream 4014 4533786 ~ 4564541 (+)
AMCG00002848 NA coding upstream 45871 4521062 ~ 4522684 (+)
AMCG00002850 adgra1,LOC105025939,LOC106604940 coding upstream 54584 4491227 ~ 4513971 (+)
AMCG00002845 NA coding upstream 102362 4450641 ~ 4466193 (+)
AMCG00002846 NA coding upstream 169298 4391354 ~ 4399257 (+)
AMCG00002853 NA coding downstream 160508 4734674 ~ 4748141 (+)
AMCG00002852 LOC107562385,LOC104957417 coding downstream 188975 4763141 ~ 4767676 (+)
AMCG00002858 btaf1,LOC107679172,LOC106604898 coding downstream 201205 4775371 ~ 4796304 (+)
AMCG00002861 march5,LOC107549154 coding downstream 276624 4850790 ~ 4867571 (+)
AMCG00002857 march5,LOC107586100,LOC107549154,LOC107676368 coding downstream 300717 4874883 ~ 4877336 (+)
G138946 NA non-coding upstream 491767 4072281 ~ 4076788 (+)
G138940 NA non-coding upstream 543810 4024442 ~ 4024745 (+)
G138927 NA non-coding upstream 578207 3989924 ~ 3990348 (+)
G138905 NA non-coding upstream 639901 3925169 ~ 3928654 (+)
G138903 NA non-coding upstream 840824 3727497 ~ 3727731 (+)
G139038 NA non-coding downstream 9699 4583865 ~ 4584167 (+)
G139044 NA non-coding downstream 52491 4626657 ~ 4712825 (+)
G139084 cpeb3 non-coding downstream 224447 4798613 ~ 4802244 (+)
G139170 NA non-coding downstream 493306 5067472 ~ 5068895 (+)
G139205 NA non-coding downstream 665184 5239350 ~ 5239490 (+)
G138941 NA other upstream 538631 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 972447 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 1452474 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2073961 2492086 ~ 2494594 (+)
AMCG00002762 NA other upstream 3158467 1406611 ~ 1410088 (+)
G139176 NA other downstream 522565 5096731 ~ 5098744 (+)
G139492 NA other downstream 1573582 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 2492689 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 2802521 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 3335086 7909252 ~ 7920908 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_08299340_08301616 HOXA10B coding CI01000016 null 8299340 ~ 8301616 (+)