G139498


Basic Information

Item Value
gene id G139498
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6194611 ~ 6197030 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU175436
GGTCTGCTATAACTAAAATTTATAACAATCCTGAggtaaataatattcaaatgggactttttaaaattcagaacCACTTGCCATGTGATTTCTCCTTTTGATAAAGAGCCCTgccatatttaatacattcaacACAATGCAGCActtatttgtttcttagcagCTAacacctttttcttttaaatacaaacaaagtgACCATTCAGGTCTAGAAATACGATTGAATCAAAAACCCGGCCTATTCTACAAGCCCGTTCTGCTTTTTACCTCCCTATTTTCCGTTAAGCTGTTTATACCACTCCAGCTCAGTCCTATTGTCTGTGCAGTCATATTTTGAGAGCAAATCAGTCTTTGTTGGTGAGAAATCCAAATCCCAAAATAGAAATCCTCCCACTGcacatgaaattaaatacttCCTCCTGCCGCAGATTCGTCTCCTCGGGCCAACATGAAATCGATCGGCACAAAACAATCCTTTAGATTCTGATGATCGCTAAAGACCACGTCCGATTTGAACACTATAACGAACACAAGGGTTTAATCACACATCCACTCAGTTGTGAAAGCCCAGCGCCCTGCATCGGCCCGTCAACGTGAAATCCAGATGGCGGCCCCTGCAGGGAGAGCTCGGCTGAGCGGCGGGGTGCGTTGTTTGCAGTGAGCCTGCAGGGTGTAAGGCATAGGTGAGGACTGATCTGGCAGCATTCCCCCAGCACCGGTTTACATGCATGGTAAATATGTACTTTATAGGTATTTCTTAACTGGTTCAGAGTTGTGATTGTGCTGTGGGTGCAGGGGGACTTGACTTGACATTACTCCAGGCTACACAGACTTTCCAGCAGCAACACAAACTACACAACAAAGAGATCCACTGCAGTTTTCTTCGGTTTACATTACACACGTGGgttgcattttttccccccactacTCAGCTTAAGACACCACGAGACATAAGtgtcaattcattttttattattaaaacggTGGTAGAAGATGATACTGTGGTTGGATGAtctgtattcatgtttattaCCTCCTGGCCATCTCTGTCCGCGGTTTCTACCTCCACACCGATCCACAGCTATGCGAATATAAACTGTGCCACTGGACAAGATTCACTGTCACTGGATTTGCAGCTTTAGTCgcacaacacatttacaataaatagttaaaaaaacGAGAAGCAAGAGCACTTGTAAAAGTGTGAGGAGCCCAGAGCACAGGACTCCGCAAAACGCCACGGGCCCCTCCACTCGCTGTAAGGCGTTTTGTGTTCGCTAGCCTGTTACATTCAAAGcaatttttggttttaaatcccAAAACAGACAATTGGCTTCTTATTGTGATGCTTTGTTTTCACACATTCCCACTCCTATCAAGAGAAGGTCTACTATACTTCCCCATATCAAGCACGACTCCATTAGAGGATCCTTCTCATTGAACTTACAGTGCATTTCAATGTAAACAACGGAACCTGCACTTGCTGATAAATTCAGAGTTGTACAGCAATAACACGTGCtagaagaaaatattattaagCATTTAGTTATTGAAGTAAATTTAGTTGGTTAGtaagcattttatatattactaCCACCAAAGAGATTAAGGACACAAGTATACCTTTCCAGAATTCAACTGTACAAAAGTGTACATCCTTGCAGGGCTGTAACTGAATACGTCTCTATTGAAGACAAGCATTGTTGTCTctgttaaaaaggaaacaaaatccaGTCACCGCAGGTTATGTTTATAAATGCATCAAGTGTCATGCACTATAATGCCGTTCAGAATATAAATTGTAGTTGCTTGTAAAACTCAGTTTGTGATTTCATTCCCTATTAAAACTGTTTGATCACTCCCATTGGGTTACACATTAGAGATAATAAGCATAAACTTACTTTAATGCAAGAGGGGTAAAGAATATTGTAACCCAGATATGCAGAACATATTGTTACTGCCTACACATTGTTGGCCTTTTAAGGggagtttttctgttttcatttaaaatgtcacaccTCAAAGAATTTCAGTGTAAAGGTTTTCCCCTTTAAAAACGGTCTTCTCAGTAACTGAGGCATGCTGTGTCAAGACTAATGATTTGAGTTCAGGGTGCAAAGCCACTGAGTACAAAGcgagaataaaatcaaattaactCACCATTATTGTACAGCTTAAAGCTCCACAGTGAATGTTCACATCATTCTTTACTGCAAAGCAATAGCAATTCACAgtacttttgaaaaaaataaataaatacaaaagccTTCAAGTTAAcaaagatataaatataaaactatccACTCCAGCTGTGTGTGGTGGCGCAGTGAGATGGCCtactgggggggagggggtcctTCCTGTCACCTCAGGTCCAGGACTGTTGTCTTCATGTCCTTCACCACAACATGTTTACATAT

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU175436 True 2420 lncRNA 0.40 1 6194611 6197030

Neighbor

gene id symbol gene type direction distance location
AMCG00002916 acta2,LOC106531354,LOC107683715 coding upstream 1111 6189364 ~ 6193500 (+)
AMCG00002909 NA coding upstream 36044 6157773 ~ 6158567 (+)
AMCG00002910 NA coding upstream 62392 6117729 ~ 6132219 (+)
AMCG00002908 LOC107553481,LOC107753437,LOC107669213,LOC107683711,LOC108413682,LOC107715956,LOC105902286 coding upstream 84099 6094105 ~ 6110512 (+)
AMCG00002911 NA coding upstream 102545 6086560 ~ 6092066 (+)
AMCG00002917 NA coding downstream 12698 6209728 ~ 6212571 (+)
AMCG00002918 NA coding downstream 31157 6228187 ~ 6234155 (+)
AMCG00002915 NA coding downstream 58140 6255170 ~ 6266600 (+)
AMCG00002921 atad1,atad1b,LOC106589392,LOC107680273 coding downstream 123106 6320136 ~ 6329764 (+)
AMCG00002925 NA coding downstream 200427 6397457 ~ 6409095 (+)
G139488 NA non-coding upstream 53940 6138121 ~ 6140671 (+)
G139351 NA non-coding upstream 375486 5818052 ~ 5819125 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 752332 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 827928 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 955121 5239350 ~ 5239490 (+)
G139504 NA non-coding downstream 1240 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 2329 6199359 ~ 6199856 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding downstream 4173 6201203 ~ 6201470 (+)
G139507 NA non-coding downstream 5814 6202844 ~ 6203059 (+)
G139531 NA non-coding downstream 100704 6297734 ~ 6311270 (+)
G139492 NA other upstream 41491 6147748 ~ 6153120 (+)
G139176 NA other upstream 1095867 5096731 ~ 5098744 (+)
G138941 NA other upstream 2164687 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2598503 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3078530 3107458 ~ 3116081 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 869825 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1179657 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1712222 7909252 ~ 7920908 (+)
G139784 NA other downstream 1726152 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1840547 8037577 ~ 8044413 (+)

Expression


Co-expression Network