AMCG00002880 (rhobtb1,LOC107654062,LOC106604002)


Basic Information

Item Value
gene id AMCG00002880
gene name rhobtb1,LOC107654062,LOC106604002
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5418675 ~ 5435914 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002880
ATGGCCGTCCCAGCTGAGGACACTAGAGCCGAGCTGCTATTACCCTTGATCCTGGACGCTGGGAGCACGGTGATGAACAATAGCATGGATTACGAGAGGCCAAACGTGGAGACGATCAAGTGTGTGGTAGTGGGAGACAATGCTGTGGGGAAGACTCGCCTGATCTGTGCGAGAGCCTGCAACACCACCCTCACACAGTACCAGCTGCTCGCCACACACGTGCCTACCGTCTGGGCCATTGACCAGTACCGGGTCTGTCAAGAGGTTCTGGAGCGATCACGTGACGTTGTGGATGAAGTGAGTGTGTCACTAAGGCTTTGGGACACTTTTGGGGACCACCACAAAGACAGGCGCTTCGCATATGGAAGGTCTGACGTGGTGGTACTGTGCTTTTCTATTGCCAACCCCAACTCTCTACATCACGTCAAGACAATGTGGTATCTTGAAATAAAGCACTTTTGCCCGCGGACACCTGTCATTCTGGTCGGATGCCAGCTCGATTTGCGTTACGCAGACTTGGAGGCTGTCAATCGAGCACGGCGCCCTTTAGCAAGGCCAATTAAACCCGGTGACATTTTACCTCCAGAACGGGGCAGAGAAGTTGCTAAAGAACTTGGCATTCCTTACTATGAAACCAGTGTATTTGACCAGTTTGGCATCAAGGACATATTTGACAATGCCATTCGAGCAGCTCTGATTTCCAGGAGACACCTTCAGTTCTGGAAATCCCATCTAAAGAAAGTCCAGAAACCTCTGCTACAGGCACCCTTCTTGCCTCCTAAGGCACCCCCTCCGCTGATAAAGATCCCAGAGTGCCCCCCCAATAACAGAAAGGGCCCCAGCCACCTGCTGGACAACCCTCTCTGCGCAGATGTCATGTTTGTTCTTCAGGACCACATTCACATCTTCGCTCACAAGATTTACCTGTCTACCTCATCCTCCAAGTTCTATGACCTCTTTCACATGGACCTGTCTGACGAGTCCCCGTGCGTGGTGGTCAAGGAGAGGCACGGCCGAGACCACCTGATGAGAACGCTCAGCCTCGACACAGAGGAGGACGTGGCCGTCTTGGCCACCCTCTCGCCTTGCTCCCTCAGAGCATCTAAGAGCGACGGCACTTTAAAAATGATGAGCTTCAATGGGAAGCACAGACGGACAAAGCTGTCCCTAGCCTCCTGGAGTAAGGCCTTTGTTAGCATCCACAAAGAGACGGTGGCCAACCCCATCACGGACGCAGCCGCCCCAATGACTGTGGTCAAGATGGACTTCTCTATTCAACTGGGCCCCTTCAGAGCGGTCCTCCGCTTCCTCTACACGGgcgagctggaggaggaggagagggactTGATGCAGATCGCACAGATCGCTGAAATCCTAGAGGTTTTCGATCTGAGAATGATGGTGGAAAACATTATGAACAAGGAAGGTTTCATGAATCAGGAGATCACTAAAGCGTTCCATGTTAGAAAAGCCAACCGGATTAAAGAATGTTTGGCTAAGGATACGTTTACAGATGTCACATTCAGGTTGGATGATGGAACCATCAATGCTCATAAGCCTTTACTGATCTCAAGCTGTGACTGGATGGCTGCTTTGTTTGGTGGATCGTTCATGGAAAGTTCAAACAATGAGGTTTACTTCCCCAGTACGAGCAAGGTGTGTATGCAAACCGTCCTGGAATATCTGTACACCAATCAGCTGTCTCCAATGGCGGATCTGGACCCCGTGGAGTTAATTGCACTTGCTAACAGATTGTGCCTTCCCCGACTGGTAGCTCTGACAGAACAATTTGCTGTGAATGAGCTGGTGAAAGCTTCAAAAGACGGAATTGATATAAACGGAGAAGTGCTCACATACCTGGAACTGGCCCAGTGGCCTGAGCAGCGACTGCAGCTCAACCGCCTCACTGACACTCTCAATCCTGCCGGCCTGGCAACTGCACCATGCGAACAGTTACCAGGAACCCAGGCAGCTCTGGGCAGCGTCACGGCGTTTGTGAATGAGGACAGCGTGGCAGGCGAGAGGAAGCAGAGGGCAGATCTGAAGGGCTCAACTCTTCACAGCCCGACCACACCGTTCCCCGAGAGCTCTGCCCGTGTCCTACTGCAGGACCTTCTGCCAAAGTGGTGA

Function

symbol description
rhobtb1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOBTB1 (Rho related BTB domain containing 1).

NR:

description
PREDICTED: rho-related BTB domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K07868 RHOBTB1_2; Rho-related BTB domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002880 True 2130 mRNA 0.52 10 5418675 5435914

Neighbor

gene id symbol gene type direction distance location
AMCG00002882 NA coding upstream 32246 5383852 ~ 5386429 (+)
AMCG00002881 NA coding upstream 34982 5380613 ~ 5383693 (+)
AMCG00002872 NA coding upstream 133603 5276915 ~ 5285072 (+)
AMCG00002871 egr2,LOC107596614,LOC107596611,LOC107739063,LOC107745678,LOC107653961,LOC107593522 coding upstream 184848 5231982 ~ 5233827 (+)
AMCG00002868 jmjd1c,LOC108412835 coding upstream 231229 5153304 ~ 5187446 (+)
AMCG00002888 ank3,LOC107746453,LOC102308332 coding downstream 101576 5537490 ~ 5616805 (+)
AMCG00002884 ccdc6 coding downstream 183313 5619227 ~ 5638109 (+)
AMCG00002885 NA coding downstream 207461 5643375 ~ 5651423 (+)
AMCG00002889 NA coding downstream 217888 5653802 ~ 5655220 (+)
AMCG00002886 NA coding downstream 222523 5658437 ~ 5665972 (+)
G139238 NA non-coding upstream 51992 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 179185 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 349780 5067472 ~ 5068895 (+)
G139084 cpeb3 non-coding upstream 616431 4798613 ~ 4802244 (+)
G139044 NA non-coding upstream 705850 4626657 ~ 4712825 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding downstream 3863 5439777 ~ 5442279 (+)
G139351 NA non-coding downstream 382138 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 702207 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 758697 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 762356 6198270 ~ 6198502 (+)
G139176 NA other upstream 319931 5096731 ~ 5098744 (+)
G138941 NA other upstream 1388751 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 1822567 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 2302594 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 2924081 2492086 ~ 2494594 (+)
G139492 NA other downstream 711834 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1630941 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1940773 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2473338 7909252 ~ 7920908 (+)
G139784 NA other downstream 2487268 7923182 ~ 7926832 (+)

Expression


Co-expression Network