RNA id: AMCG00002880


Basic Information

Item Value
RNA id AMCG00002880
length 2130
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00002880
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5418675 ~ 5435914 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGTCCCAGCTGAGGACACTAGAGCCGAGCTGCTATTACCCTTGATCCTGGACGCTGGGAGCACGGTGATGAACAATAGCATGGATTACGAGAGGCCAAACGTGGAGACGATCAAGTGTGTGGTAGTGGGAGACAATGCTGTGGGGAAGACTCGCCTGATCTGTGCGAGAGCCTGCAACACCACCCTCACACAGTACCAGCTGCTCGCCACACACGTGCCTACCGTCTGGGCCATTGACCAGTACCGGGTCTGTCAAGAGGTTCTGGAGCGATCACGTGACGTTGTGGATGAAGTGAGTGTGTCACTAAGGCTTTGGGACACTTTTGGGGACCACCACAAAGACAGGCGCTTCGCATATGGAAGGTCTGACGTGGTGGTACTGTGCTTTTCTATTGCCAACCCCAACTCTCTACATCACGTCAAGACAATGTGGTATCTTGAAATAAAGCACTTTTGCCCGCGGACACCTGTCATTCTGGTCGGATGCCAGCTCGATTTGCGTTACGCAGACTTGGAGGCTGTCAATCGAGCACGGCGCCCTTTAGCAAGGCCAATTAAACCCGGTGACATTTTACCTCCAGAACGGGGCAGAGAAGTTGCTAAAGAACTTGGCATTCCTTACTATGAAACCAGTGTATTTGACCAGTTTGGCATCAAGGACATATTTGACAATGCCATTCGAGCAGCTCTGATTTCCAGGAGACACCTTCAGTTCTGGAAATCCCATCTAAAGAAAGTCCAGAAACCTCTGCTACAGGCACCCTTCTTGCCTCCTAAGGCACCCCCTCCGCTGATAAAGATCCCAGAGTGCCCCCCCAATAACAGAAAGGGCCCCAGCCACCTGCTGGACAACCCTCTCTGCGCAGATGTCATGTTTGTTCTTCAGGACCACATTCACATCTTCGCTCACAAGATTTACCTGTCTACCTCATCCTCCAAGTTCTATGACCTCTTTCACATGGACCTGTCTGACGAGTCCCCGTGCGTGGTGGTCAAGGAGAGGCACGGCCGAGACCACCTGATGAGAACGCTCAGCCTCGACACAGAGGAGGACGTGGCCGTCTTGGCCACCCTCTCGCCTTGCTCCCTCAGAGCATCTAAGAGCGACGGCACTTTAAAAATGATGAGCTTCAATGGGAAGCACAGACGGACAAAGCTGTCCCTAGCCTCCTGGAGTAAGGCCTTTGTTAGCATCCACAAAGAGACGGTGGCCAACCCCATCACGGACGCAGCCGCCCCAATGACTGTGGTCAAGATGGACTTCTCTATTCAACTGGGCCCCTTCAGAGCGGTCCTCCGCTTCCTCTACACGGgcgagctggaggaggaggagagggactTGATGCAGATCGCACAGATCGCTGAAATCCTAGAGGTTTTCGATCTGAGAATGATGGTGGAAAACATTATGAACAAGGAAGGTTTCATGAATCAGGAGATCACTAAAGCGTTCCATGTTAGAAAAGCCAACCGGATTAAAGAATGTTTGGCTAAGGATACGTTTACAGATGTCACATTCAGGTTGGATGATGGAACCATCAATGCTCATAAGCCTTTACTGATCTCAAGCTGTGACTGGATGGCTGCTTTGTTTGGTGGATCGTTCATGGAAAGTTCAAACAATGAGGTTTACTTCCCCAGTACGAGCAAGGTGTGTATGCAAACCGTCCTGGAATATCTGTACACCAATCAGCTGTCTCCAATGGCGGATCTGGACCCCGTGGAGTTAATTGCACTTGCTAACAGATTGTGCCTTCCCCGACTGGTAGCTCTGACAGAACAATTTGCTGTGAATGAGCTGGTGAAAGCTTCAAAAGACGGAATTGATATAAACGGAGAAGTGCTCACATACCTGGAACTGGCCCAGTGGCCTGAGCAGCGACTGCAGCTCAACCGCCTCACTGACACTCTCAATCCTGCCGGCCTGGCAACTGCACCATGCGAACAGTTACCAGGAACCCAGGCAGCTCTGGGCAGCGTCACGGCGTTTGTGAATGAGGACAGCGTGGCAGGCGAGAGGAAGCAGAGGGCAGATCTGAAGGGCTCAACTCTTCACAGCCCGACCACACCGTTCCCCGAGAGCTCTGCCCGTGTCCTACTGCAGGACCTTCTGCCAAAGTGGTGA

Function

GO: NA

KEGG:

id description
K07868 RHOBTB1_2; Rho-related BTB domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175122 lncRNA upstream 51992 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 179185 5239350 ~ 5239490 (+) True G139205
TU175041 lncRNA upstream 349780 5067472 ~ 5068895 (+) True G139170
TU174942 lncRNA upstream 616431 4798613 ~ 4802244 (+) True G139084
TU174889 lncRNA upstream 705850 4626657 ~ 4712825 (+) True G139044
TU175151 lncRNA downstream 3863 5439777 ~ 5442279 (+) True G139263
TU175250 lncRNA downstream 382138 5818052 ~ 5819125 (+) True G139351
TU175425 lncRNA downstream 702207 6138121 ~ 6140671 (+) True G139488
TU175436 lncRNA downstream 758697 6194611 ~ 6197030 (+) True G139498
TU175445 lncRNA downstream 762356 6198270 ~ 6198502 (+) True G139504
AMCG00002882 mRNA upstream 32246 5383852 ~ 5386429 (+) True AMCG00002882
AMCG00002881 mRNA upstream 34982 5380613 ~ 5383693 (+) True AMCG00002881
AMCG00002872 mRNA upstream 133603 5276915 ~ 5285072 (+) True AMCG00002872
AMCG00002871 mRNA upstream 184848 5231982 ~ 5233827 (+) True AMCG00002871
AMCG00002868 mRNA upstream 231229 5153304 ~ 5187446 (+) True AMCG00002868
AMCG00002888 mRNA downstream 101576 5537490 ~ 5616805 (+) True AMCG00002888
AMCG00002884 mRNA downstream 183313 5619227 ~ 5638109 (+) True AMCG00002884
AMCG00002885 mRNA downstream 207461 5643375 ~ 5651423 (+) True AMCG00002885
AMCG00002889 mRNA downstream 217888 5653802 ~ 5655220 (+) True AMCG00002889
AMCG00002886 mRNA downstream 222523 5658437 ~ 5665972 (+) True AMCG00002886
TU175054 other upstream 319931 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 1388751 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 1822567 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 2302594 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 2924081 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 711834 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 1631029 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1940773 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 2487268 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 2601663 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile