RNA id: TU175425


Basic Information

Item Value
RNA id TU175425
length 1498
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G139488
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6138121 ~ 6140671 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgtatatatattggcTACAATGTTATTATGTATAATATCTCCACATTGTGTATCAATCATAAAATAGtacaagtaaaaatacattagtttCACACAAcccatttgtttctgttgttgtttttacaataataataatttcatactTAATTTCACTTCAATCATGTTCTACTCTTATTCTCCCTCACTCATACCAAGACATATTtacagtattcattttctttattaatgccAGAGTTTCAAAAGCATCTTCATGACTTTAACTCATcttgtttgtaatttatttagtcGTAGGGAACACTTTTCTCGTGCCCAAGAGGGCTCTGATATTTTAATGCCTTCTTTATACAATGCAATTGCTTCCTCAGGAGATTCTCTATGATAGTACTTGAAATTGCCATAATAGAGATAAAATGCTTGCACATCTTTgggtttcatttcagataatCTCCCAAACATCGCCATAAATATTTCTTCTGCTATTTCTTTGTCTCCGCACTCTGCATACATCTCTGCGAGGTCAAACTCAATATAGATGTAATTTGGCTGAACCCTCAGAACTTCGTTAAAATTTTCAATGGCCCGACTTAAAAGACTGTTCAACTCTTCTCGATTATCTCGATTGGATTGTTTCTCAATACCGTATTTCCACTTGCAACAGAGTGCTAACTGATGTTTCAGAAAACACGTATCTGGAGACAACTGCAGAGCCCTTTCCAACAGTGCAAAAGCTCTGTCTAATGAGCCATGCAATCTAAATAATTTCACTACATTTCGGATGACCTGGGGATTATCCTTTGCCTTCTGTAAAGCTTGCTCTGCTAGCTCTTGGGCTTCCTGCATATAGCCATACTCTGTTAGCTTTAAGCCCAGGTATATAGTGACAAAAGCATTTCCGGGGTCTAGTTGTTTCGCAAGCCTTAACTGAGGAAGAGCAATTGAATCTTGTTCACTGCTCATCCTTGTACCTAAACCTTCAAGCCGGGTAAGGACAATAGCATACCCTGAATGCCATTCCTTGTTTTCTGGTTGTTCTTTTAGAGCCATCTCAAAAAATGTCTTTGCCAACTCATAATTCTCCGATGAAAACTTGAGAAGAGACCAGGCCTTTTCCCCATACAATTCTGGATGAAGGATGACAGGAGAAGCTCTGGGGAACTTGTCTGCAATCTGTGCCAGTTTCTCCAGGTAGCGCTGAGCGTTAGTGTGGTCCCCCATCTTGTAGTACAGCCAGGCAAAGTCTCCGTAAGGAACAATGAGCATCTTCTCACATTCATTGTCAAAGTTCTTCCTGGTAGTTTTATCAGCCTCCTCTAGGCTTGCTAGTGCTGCCTCAGGTAGACCTTGCAAGTATTTAACGTACGCTAGGAGACTGTACAGTCTTCCAAGCCAATTCCCTTCTTCACCTAAATAATACTCAATGTCATTTTCtagtctctctctcaggtcatTGAGATCAGGTAAATCTCTCTTGAGACCCCAGGTGAAGTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175250 lncRNA upstream 318996 5818052 ~ 5819125 (+) True G139351
TU175151 lncRNA upstream 695842 5439777 ~ 5442279 (+) True G139263
TU175122 lncRNA upstream 771438 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 898631 5239350 ~ 5239490 (+) True G139205
TU175041 lncRNA upstream 1069226 5067472 ~ 5068895 (+) True G139170
TU175436 lncRNA downstream 53940 6194611 ~ 6197030 (+) True G139498
TU175445 lncRNA downstream 57599 6198270 ~ 6198502 (+) True G139504
TU175446 lncRNA downstream 58688 6199359 ~ 6199856 (+) True G139505
TU175447 lncRNA downstream 60532 6201203 ~ 6201470 (+) True G139506
TU175448 lncRNA downstream 62173 6202844 ~ 6203059 (+) True G139507
AMCG00002910 mRNA upstream 5902 6117729 ~ 6132219 (+) True AMCG00002910
AMCG00002908 mRNA upstream 27609 6094105 ~ 6110512 (+) True AMCG00002908
AMCG00002911 mRNA upstream 46055 6086560 ~ 6092066 (+) True AMCG00002911
AMCG00002904 mRNA upstream 99213 6020258 ~ 6038908 (+) True AMCG00002904
AMCG00002903 mRNA upstream 121876 6011828 ~ 6016245 (+) True AMCG00002903
AMCG00002909 mRNA downstream 17102 6157773 ~ 6158567 (+) True AMCG00002909
AMCG00002916 mRNA downstream 48693 6189364 ~ 6193500 (+) True AMCG00002916
AMCG00002917 mRNA downstream 69057 6209728 ~ 6212571 (+) True AMCG00002917
AMCG00002918 mRNA downstream 87516 6228187 ~ 6234155 (+) True AMCG00002918
AMCG00002915 mRNA downstream 114499 6255170 ~ 6266600 (+) True AMCG00002915
TU175054 other upstream 1039377 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2108197 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2542013 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3022040 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 3643527 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 7077 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 926272 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1236016 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1782511 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1896906 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile