RNA id: AMCG00002904


Basic Information

Item Value
RNA id AMCG00002904
length 6023
RNA type mRNA
GC content 0.42
exon number 32
gene id AMCG00002904
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6020258 ~ 6038908 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCGGGTGCAGCGTCGCCATTGGacgattttaaaaataagaccgCGACAGTTTGAGAAGGAGTGATTTCTTTTAGATGAGTGTTTTTCGGAGCATATTTTCACGACCAtCATGATGGAGTCGTGTTTCAATAATCAAACTGATGACAGCATGGACCCTTTGAGTTTAGAAGGGGTGAAGAAAGATCTCTCTGAAGAATTTCTGTCCATGTCAGTATTGTCCCAGgATCCTAGCTTGCAAGAGAAAGAACACCTGCATGTTTACTTGCGTATAAGGCCATTCACTGCAGCAGAAAAAGACAATGATGAATCGCAGGAGTGTGTTACCATTGAAAACTCAGATACTGTATTACTGAAGGCTCCGAGAAGTTCTCTGTCAGCCAGGCTCAGTGATAAATCTCTTCAGCAGACTGCCCAGCGATTTCAGTTCTCTAAGgTTTATGGTCCACAAATGACACAGAAGGACATATTCAACGGCACCGTCAAGCCTCTCGTTAAAGATGTTCTCGAAGGAGGAAACTCTCTTGTGTTTACATACGGAGTAACCAATGCTGGGAAGACCTTCACCTTTCTAGGTCCTGACAATGATACGGGTATCCTGCCAAGGTCACTGAACATGATATTCAACAACATTCAAGACAAGATCTACACACAGATGGACATCAAGCCACACAGATGTAGAGAATACACCAGACTTACCAAAGACCAGCAGGTGGAAGAACATGCGAGTAAAAAAGCCATCCTTCGATTCACAAAAGAGAATGATTCTCAGAAAAGCACGAGTATCCAATCAAATTCAGACAACAGGTCTAACCTACTTGAAggcaagtatttattttgggtATggaCTACTATTAATGGTCTAGATGTAGATGAATCCCTAGACTCTGAAAGCTTCACTCTAAACCTCGGTGATCACACCAAATTCTCCATATGGGTGTCATTTTGCGAGATCTATAATGAAAGCATTTATGACTTGCTGGAGAGCATACCCACTGGTTCACTGAGGAGAAATACGCTGAGGCTTGCACAAGATGTCAAAGGACACACCTATGTGAAAGATCTCAAATGGGTACAAGTTAATGATGCAGACGAAGCATATAAAGTTCTGAAGctgggaaaaaaacaccagaGCTTTTCCTGTACAAAACTCAATCACCTATCGAGCCGGAGtCACAGCATATTCTCCATTCGGATCATACGCATTGAAGATGTTGGAATACCGCGTGTGCAAAAAATCAGCGAGCTGTCTTTGTGTGATCTTGCTGGATCCGAGCGATGTGCCAAGACGCAGAATAAGGGAGACCGTTTAAAGGAAGCTGGGAACATCAATACCTCCCTGTTGATTCTTGGAAAATGTCTCACTGCTTTGAGATATAACCAGCAGGCAAAGCTGCCTCAGCATGTGCCCTTCAGGGAGAGCAAACTGACTCATTACCTTCAAGGATTTTTCTGCGGCAGAGGAAGAGCTTGTATGATTGTGAACATTAATCAGTGTGCTTCCATGTTTGACGAAACACTGAACGTGCTGAAGTTTTCTGCACTCGCTCAGAAGGTGGTGGTCCTCACTACAACAAAGCCCCCTTCAGTTGCAAAGAAATCTGCTCGAGAGGtgtctttcattattaataacgCAGACCGTAAGCACtggcgaaagagagagagctccTTTATTAGTTGGGATACAAGTCTGGAAGATGTGCaggaagatgatgatgatgatgaggaggatGAAAGTATGGAAGAAACCATTCAGGATGAGGATGAAGAAGATGCAATACAAGTCAATAAAGAATTGTATGAGAAACAAATCACCCTGATCGAAGATTTGAAAAATAAGGTCCTTGAAGAAAAAGCGGACAAACTCTTGCTGGAATCAAGAATTCGCGAAGAGGTTTCGAAGGAGTTCACAGAGTTGTTCTCACAAATGGAAAGTGATTTCAGTGAACGTcttgagaaagaaaaggagatcATTGAGGAGAGAGCTGAGAGGCGGATGGAAATCTTCCGAAATTTAGTACGCCAGAAGCCGGATGAAGAAGCTGCTGGTGGCAATGAAGCTAGGCTGAGTTCGGAACACAAACTTGTCATGCTGGATGGAATGGTTGATGCTATGCAAGATGACCTTGCTGGGATCAAGAAAGATGCACAAGCTGCACAAGATTGTCTTGTTAGTTTAACTGATCCCAAAGAAACTATTACAAGCCTTGAGAACCAGCTGTCTAATCTATCGGAAGATCTGAAAAAAACTCAAGAACTACTTACATTGAAAACTACAgAATGTGAAACCGCCATTCGCAATCAAATGGAGGAAAATGGCCAACTTATTGCAGCCAGAACGAAACTCGAGTCACAGAATGAAAAGCTCCAGTGTCTTATGGAGTTCTGTCAAGAAAAGGATGACATGATTTCTAAACTGCAAAATGAGTTGGACCACTGGGAAGAAACGGCTACGAAGGACaagACTATGATTGAAGCTATCAAAGGAGAAATCTTGCACTTAAAAACGAATTGTACTTGCTCAAGTGGAAACGACCGTGATGCTCACCGAGACAGCAGGAAAAGAGGTGGCGACATCCAGCAGAACCTTGAGGGACAGCCGCCACTCAAGAAAGgTGCAAATGATGAGGAAAGGGACTGCATCATGATACCAAAAAAGGATGAACTGCAAGCAgaacttaataaaaaacatttggagGTAGTGGAATTGAAGGAAAATGTAGAACATTTACAGCAGGAGTTAAAATCTGTCGCCACAAATTTCCAGAATGAAATCCGACTGAAAGATGAGCTAATTGGTCAAATTAAAGAGGCGCTTTCTTCCTCGGAAAGAAAAGTCAAGGAGCTGAGTGATGAACTTAAACAACAGGCCCTTTCCtatgaaaatactttaaagGCTCTGGAGGATCACAGCaaagaaaaccagaagaccgttgaacaaaatgaaaagctggTAAAGGAAATGAGTCGCCTTCAGAAAGATGCGGAGGAAAATGCTCTCAAGATTAAACAAGTGGAGGATGCACTCAACAAAGAAAGGGAACAAGTAGAAAAGGCTTCTGCTGAATTAAAAGCCACTAAAGACCTCTTGATGAAACATGAAGCAGATTCCCAGGAGACGTCCCAAATGATTGGCACCTTAAGAAATCGGGTGGAGCTCCTTACACAGCAACTGGAAGAGTCCCAAGACTTGGCAGCAAAGAGGGACAGCAGCCACTTCCATGAAACCATTGAGTCCTTGCACAAAGAGTGTGAGAAGGTGGTTAAAGAGTCAGCACAGAAAAGTCAGCAGATTCTTCATCTGGAGCAGGAAATCAACAGTTTGAAACAGCAGATGGCTGAACAAAAGGAGCTATCTACCCAGCTGACACAAGAGCTCAGCGGATTGCAAAGTGCTTGTAGTGAATTAATGGAAAAAGAGACCCTTATTAaccagctgagagagagactaGAAACCCTTTCAAAAGATCTTGAATCCGAAAGACAGGTAGTTACCGAAAAGAAGAAGGTGCAGTCCAACCTAGAGAACGAGGTTGTTCATCTCAaaggaataattaaaaactttgaaGAGCAGGGACAAATTTCTAAGTCAAGTTTTGACAAGGTAGTGGAGTTAGAGCAGCAGCTGGCAGGGAAAGAGTCCTTAATGGAAAATCTGCAAAACTGTTTAAAGGAAACTCAATGCAAGCTCGAAGATTTGGAGTCCAACTCATCCCTTCAGGAAGCCAAGCTGTCTGAGGCGGAGCAAAGCCTCAAAACGGCCAATGAAACGATTGCTGGAAAGGATGCAGAACTGAAAAACCAGAAACTGGAGTTGCTAAGactGAAGGAGCAAGTCAATGATGGTTTGCAAAAAATCCAGAGTTTGAGCCTtgattttcaaagaaaagaGGAGGATGCCTCTGATTTGAAAGAGAAGCTGGTTGATTCAAAAAAGCAAATCCAACAAGTACAAAGAGAGATTTCATCAATGCGTGAAGAGGAGAGAATCcttaaacaaaaattaaatgatttggaGAAAGTAAAAAACCAAATGATTAAGGATTTGAGTAGCAAAGACCGGACAATTCACCAATTAAAGAGCGAACAGTCTAACAGACTGAAGTCGGATGAGAGTGTGCAGCTGTACCAAAAGACACTCAAagATCTGCAAGCTAAAGACCAAGTGATTGAGGACATGCGGCTCGCCCTGACTGAGCAGGAGGAGACTCAAGTGGAGCAAGATCGCGTTCTTGAGGCTAAATTGGAGGAAATTGAAGCTCTAACTGCagaaaagcaaatgttGAAGCAGAAACTTCTAAACCCAACGATGGGCACGGTCAAAGAAGATCAAATGATGGAAGAAAGCATAAACGGTCAATCTGAACGTGCTCGGCGAGAAGTGGATAACTTGAAAGAAATCTTGAAGCTTTCTGAGGAGAAGCATCAAGCTGACAGAAGGAAGTGGCAGGAAGAGAGATTAACGCTGATAAAACAGGCAAAAGAGGCTGAGGTGCGAAGACACAATGATATGAAGAAATATGCTGAAGACCGTGAGCGCCATTCCAAGATGCAAACAGAAGTGGAAAACCTAACAAAGCAACTCTCTGAGAAGGACGGCGATCTTCagaaatggagaaaagaaaGGGATGACTTGGTAGCAGCTCTGGAAGTCCAGCTCAAGAGTCTTCGGACTGCTAATCTACAGAAAGACAAAGAATTGGAGAACCTCAGACAAGATCTCAATGCTCGGCCACGTGAGGGCATTGGGAACAACCAATCTGTTCTGGACTCTTCTGGGATCTCCACGGAAAATGGAAGAACCAGCAGATTTCCCAAACCTGAGCTCGAGATTCAGTTCACGCCTCTTCGGCCCAATAAAATGGAAGTCAAAATGCAAGGCGAGGCTTCTCCAGTAACCATCAAAATACCAAGAACAAGGAAGAGGAAAAgcaatgaaatggaaaagGACTTCGTGGAGAGTGAGAACAGGATGAACATCCGATCCAGAACCGCATCCAGGAACATAAAAGAGCAGTCACCAGCATCCTTAAGGAGGCAGGCGTCGCGTACGAGCCTAAAGTCAGAGAACCGAAAAAAAGATGGACCTTTGCAGAAGATTGGAGACTTTATCCAGAGCTCTCCGAATCTTCTACAAAGCAAAGCAAAAAAATTCATTGGATCCCTCAATGCTAAATCTCCAGAACCACTGAATGGCAAAGGAATTGACTCCAAGCCAAAGAAATCCAAAAGAAAActgtataaaactgaaatttctTCTCCTTTAGACATCCCTTCTCATCCAATTGTCGGTCTGGATCAAGATGAGAAAGAAAGCGATCATCTCATTATCAAAAGAAGACTACGATCAAGAACGGCAAGAAGATGATGTGACCTTTAACCAcagtgcactttttttttttatcaaatgttttgtatattttgattttactGTACTTAAATTTTAGTATTTAGAATTCTCTACCCTAAATACTGGGctgctttttgtttggtttgttttacaaATCATAGGGAtcaggatttttgtttttgtgggcCACATAAGATCAGGAAAGATGCCTTTAAAACattgattaaaaatgtttcatatataatgtttatacattttttttaatttgaaatcttgAATTTGCGCCCATAATAGATTAAGCTGAAAAGAAGATtaagcaactttttttttcttgttagtatttttctgtcaaataaattatttcaaaatgtgaattgattttagttttagttcaATAGATTTGGAATATATTAACTATTTTTAATGAGAAGTAGTTGAAGCTTTGTTTATGGACTGTGGAATTTAAGGACCTCAGAGAAGAGAAGACGGAGCAAAAGCTTTGGATCAGTGCTGTATGGTCAGTGATCTATTAGTCGTTTGGGATCCTGCGTTTCCTGGAGCAATTGACCGTTTTATTCGCAGTGACTGGATGTACATAATTTGGGGATAATTGCATTGGAACTATGTACCCTTTGTAAAATTATACCAGCGAATAAATGGAACTGTTAAAAGTC

Function

GO: NA

KEGG:

id description
K10402 KIF20; kinesin family member 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175250 lncRNA upstream 201133 5818052 ~ 5819125 (+) True G139351
TU175151 lncRNA upstream 577979 5439777 ~ 5442279 (+) True G139263
TU175122 lncRNA upstream 653575 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 780768 5239350 ~ 5239490 (+) True G139205
TU175041 lncRNA upstream 951363 5067472 ~ 5068895 (+) True G139170
TU175425 lncRNA downstream 99213 6138121 ~ 6140671 (+) True G139488
TU175436 lncRNA downstream 155703 6194611 ~ 6197030 (+) True G139498
TU175445 lncRNA downstream 159362 6198270 ~ 6198502 (+) True G139504
TU175446 lncRNA downstream 160451 6199359 ~ 6199856 (+) True G139505
TU175447 lncRNA downstream 162295 6201203 ~ 6201470 (+) True G139506
AMCG00002903 mRNA upstream 4013 6011828 ~ 6016245 (+) True AMCG00002903
AMCG00002900 mRNA upstream 106735 5908977 ~ 5913523 (+) True AMCG00002900
AMCG00002897 mRNA upstream 141234 5858274 ~ 5879024 (+) True AMCG00002897
AMCG00002895 mRNA upstream 168387 5850528 ~ 5851871 (+) True AMCG00002895
AMCG00002896 mRNA upstream 202572 5779744 ~ 5817686 (+) True AMCG00002896
AMCG00002911 mRNA downstream 47652 6086560 ~ 6092066 (+) True AMCG00002911
AMCG00002908 mRNA downstream 55197 6094105 ~ 6110512 (+) True AMCG00002908
AMCG00002910 mRNA downstream 78821 6117729 ~ 6132219 (+) True AMCG00002910
AMCG00002909 mRNA downstream 118865 6157773 ~ 6158567 (+) True AMCG00002909
AMCG00002916 mRNA downstream 150456 6189364 ~ 6193500 (+) True AMCG00002916
TU175054 other upstream 921514 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 1990334 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2424150 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 2904177 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 3525664 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 108840 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 1028035 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1337779 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1884274 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1998669 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile