RNA id: AMCG00002881



Basic Information


Item Value
RNA id AMCG00002881
length 783
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00002881
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5380613 ~ 5383693 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACTTTCTTTAACTTCGTGAGCGCCGTGATCACCAGGTTCTTCTTTATCCTGCTGTCCCTGATCGGAGTGTGGAGGGTGACTTTTGTCAAACAGGACAAACTGTACTGGCTGCTGACCATCCTGTACTTACCTCTGGTTGTTGAGATGATATTTACCTTGAAGAGGAGGAAAGGACGTGACTATAAGTGGATTTCGCCAGCGATCTTACTGTTCCTTATAAGCATAATACCATCCATCTGGATTTTGGAGCTgcaccaccaaaaaaataaagcaaaaaattCAGAGTGCAATCATTTGGATTCAATCGATAACATCAAGAATGTTTTGAACAGGAAAAATGAAACCTTTGCAAAGGTGGTGAACCTGTGCGATGATGCCTGGATCCTGGCGCTTCACCAGATCATGCTTATTCTGCTGATCGTGGGGAAGTGGCTGCTGCCCATCGGTGTGGGCATCAACAGGGACCAACTGTCCCAGCTGCTGCTCATGTTCGTGGGCATAGCGGCAGATATACTTGAATTTACCACCGAGACGCTCTCCAAAGTCAAGGATGGAAATAGTTTGGTGTATATCATCCTTTCTGTATGGACCCTGGGTATGCTGCAGTTTCCATTTCATGTTGCAGGGTTAAGTGGTCTTTCGGTGGCCCTTGCGCTGGCACTAGTACCGAGCAGCAGCCAGGCTTTGAAGGAGGGTGATTGTGAAGTGTGCCTTAGCGTTTTGGGGAGGTTTTACCAATCTCTAAAAGATAACAAAGTGGATTTCACAAGGCAGCTATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU175122 lncRNA upstream 13930 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 141123 5239350 ~ 5239490 (+) True G139205
TU175041 lncRNA upstream 311718 5067472 ~ 5068895 (+) True G139170
TU174942 lncRNA upstream 578369 4798613 ~ 4802244 (+) True G139084
TU174889 lncRNA upstream 667788 4626657 ~ 4712825 (+) True G139044
TU175151 lncRNA downstream 56084 5439777 ~ 5442279 (+) True G139263
TU175250 lncRNA downstream 434359 5818052 ~ 5819125 (+) True G139351
TU175425 lncRNA downstream 754428 6138121 ~ 6140671 (+) True G139488
TU175436 lncRNA downstream 810918 6194611 ~ 6197030 (+) True G139498
TU175445 lncRNA downstream 814577 6198270 ~ 6198502 (+) True G139504
AMCG00002872 mRNA upstream 95541 5276915 ~ 5285072 (+) True AMCG00002872
AMCG00002871 mRNA upstream 146786 5231982 ~ 5233827 (+) True AMCG00002871
AMCG00002868 mRNA upstream 193167 5153304 ~ 5187446 (+) True AMCG00002868
AMCG00002867 mRNA upstream 356030 5012179 ~ 5024583 (+) True AMCG00002867
AMCG00002866 mRNA upstream 371868 4963957 ~ 5008745 (+) True AMCG00002866
AMCG00002882 mRNA downstream 159 5383852 ~ 5386429 (+) True AMCG00002882
AMCG00002880 mRNA downstream 34982 5418675 ~ 5435914 (+) True AMCG00002880
AMCG00002888 mRNA downstream 153797 5537490 ~ 5616805 (+) True AMCG00002888
AMCG00002884 mRNA downstream 235534 5619227 ~ 5638109 (+) True AMCG00002884
AMCG00002885 mRNA downstream 259682 5643375 ~ 5651423 (+) True AMCG00002885
TU175054 other upstream 281869 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 1350689 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 1784505 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 2264532 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 2886019 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 764055 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 1683250 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1992994 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 2539489 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 2653884 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile