AMCG00002928 (LOC106589397)


Basic Information

Item Value
gene id AMCG00002928
gene name LOC106589397
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6454872 ~ 6455141 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002928
ATGAGTGATCTGGAAGAAGACTTTGCTAAAATCCTTATGATCAAGGAAGAAAGGATCAAGGATTTGGAGAGACGGTTGGTGGAGAAGGAAGAAGAAATCCATGAGCTCAAGAGAAAACTGCACAAATGCCAGTCGGTGCTGCCCAGCGCCCAGATCATCGGACCCAGGACCAGGAGAGCCCAGGGCATTTCAGCAGAGCCACAGACTTACAGGTCTTTCCAAGACCTGACCAGGCAAGCCTTCAGGAAATACGCAAAGTCTGAAAGGTAA

Function

NR:

description
PREDICTED: cGMP-dependent protein kinase 1 isoform X3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0030553 cGMP binding molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002928 True 270 mRNA 0.49 1 6454872 6455141

Neighbor

gene id symbol gene type direction distance location
AMCG00002926 NA coding upstream 35489 6410426 ~ 6419383 (+)
AMCG00002925 NA coding upstream 45777 6397457 ~ 6409095 (+)
AMCG00002921 atad1,atad1b,LOC106589392,LOC107680273 coding upstream 125108 6320136 ~ 6329764 (+)
AMCG00002915 NA coding upstream 188272 6255170 ~ 6266600 (+)
AMCG00002918 NA coding upstream 220717 6228187 ~ 6234155 (+)
AMCG00002930 prkg1,prkg1b,LOC107708873,LOC107695529,LOC106589397 coding downstream 8572 6463713 ~ 6464276 (+)
AMCG00002929 LOC106578950,LOC106589397 coding downstream 101329 6556470 ~ 6575271 (+)
AMCG00002931 NA coding downstream 123842 6578983 ~ 6581030 (+)
AMCG00002938 NA coding downstream 620133 7075274 ~ 7077227 (+)
AMCG00002937 bicc1,bicc1b,LOC107653928,LOC107695510,LOC107596591 coding downstream 677035 7132176 ~ 7152164 (+)
G139572 a1cf,LOC107708930,LOC107695528,LOC107654048,LOC107739758 non-coding upstream 31704 6420166 ~ 6423168 (+)
G139573 NA non-coding upstream 36074 6418438 ~ 6418798 (+)
G139531 NA non-coding upstream 143602 6297734 ~ 6311270 (+)
G139507 NA non-coding upstream 251813 6202844 ~ 6203059 (+)
G139506 stambpl1,LOC107594159,LOC107758441,LOC107683716 non-coding upstream 253402 6201203 ~ 6201470 (+)
G139633 NA non-coding downstream 607382 7062523 ~ 7066374 (+)
G139656 NA non-coding downstream 697396 7152537 ~ 7152739 (+)
G139667 NA non-coding downstream 741737 7196878 ~ 7197097 (+)
G139827 NA non-coding downstream 1497985 7953126 ~ 7953340 (+)
G139832 NA non-coding downstream 1543072 7998213 ~ 7999259 (+)
G139492 NA other upstream 301752 6147748 ~ 6153120 (+)
G139176 NA other upstream 1356128 5096731 ~ 5098744 (+)
G138941 NA other upstream 2424948 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2858764 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 3338791 3107458 ~ 3116081 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 611714 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 921546 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 1454111 7909252 ~ 7920908 (+)
G139784 NA other downstream 1468041 7923182 ~ 7926832 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1582436 8037577 ~ 8044413 (+)

Expression


Co-expression Network